View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_high_8 (Length: 480)
Name: NF1399_high_8
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 47 - 470
Target Start/End: Complemental strand, 49627476 - 49627054
Alignment:
| Q |
47 |
cttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattgagttnnnnnnnncaaaagaaagcct |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49627476 |
cttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattgagttaaaaaaaacaaaagaaagcct |
49627377 |
T |
|
| Q |
147 |
aaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatatgtattgattttat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627376 |
aaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatatgtattgattttat |
49627277 |
T |
|
| Q |
247 |
gattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttcnnnnnnnnnnnggaatttttgtc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49627276 |
gattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttc-aaaaaaaaaaggaatttttgtc |
49627178 |
T |
|
| Q |
347 |
atattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctggcctttatacggg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49627177 |
atattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctggcctttatacggg |
49627078 |
T |
|
| Q |
447 |
gtgatgaatgtagcgggttctgtg |
470 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49627077 |
gtgatgaatgtagcgggttctgtg |
49627054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University