View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_high_9 (Length: 478)
Name: NF1399_high_9
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 47 - 468
Target Start/End: Complemental strand, 49627476 - 49627054
Alignment:
| Q |
47 |
cttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattgagttnnnnnnnncaaaagaaagcct |
146 |
Q |
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| T |
49627476 |
cttttcccccaaattttacttgcaaacgatagccccgcctaggtatatgaacttattctccatcgattaggattgagttaaaaaaaacaaaagaaagcct |
49627377 |
T |
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| Q |
147 |
aaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatatgtattgattttat |
246 |
Q |
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| T |
49627376 |
aaatatgcttataagaaggtgcagaattttcttttaatacttgagtttatcttaactttgtttagaattgatttaatcggggaatatgtattgattttat |
49627277 |
T |
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| Q |
247 |
gattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttc-nnnnnnnnnggaatttttgtca |
345 |
Q |
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| T |
49627276 |
gattaaagtattgaacataaagaatgttggatcaattctcgcataagactatttaaaagaatttttgtcattccttcaaaaaaaaaaggaatttttgtca |
49627177 |
T |
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| Q |
346 |
tattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctggcctttatacgggg |
445 |
Q |
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| T |
49627176 |
tattcctttgttacaaacaacaaaattaaaaaggagaaaagacaatgtcttccaatttaagtgtcaaaaacaatatgtagattctggcctttatacgggg |
49627077 |
T |
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| Q |
446 |
tgatgaatgtagcgggttctgtg |
468 |
Q |
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| T |
49627076 |
tgatgaatgtagcgggttctgtg |
49627054 |
T |
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