View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_low_11 (Length: 464)
Name: NF1399_low_11
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 48106762 - 48106645
Alignment:
| Q |
29 |
atagaaatatataaatctctatgaatggcagccattgatgactgttcttggagcttctgggcctaattacatgaaaaacaaacaattttgattaaaatat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48106762 |
atagaaatatataaatctctatgaatggcagccattgatgactgttcttggagcttctgggcctaattacatgaaaaacaaacaattttgattaaaatat |
48106663 |
T |
|
| Q |
129 |
aatataattaattctcac |
146 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48106662 |
aatataattaattctcac |
48106645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 48106524 - 48106431
Alignment:
| Q |
268 |
cgttgttcgtctctttgcgtggtaacgttaatcgtaaatttttccgttaagtccattcgtcgtgtcgtaaacttttccgttgagtccgttcgtc |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48106524 |
cgttgttcgtctctttgcgtggtaacgttactcgtaaatttttccgttaagtccattcgtcgtgtcgtaaacttttccgttgagtccgttcgtc |
48106431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 18875664 - 18875701
Alignment:
| Q |
72 |
gttcttggagcttctgggcctaattacatgaaaaacaa |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18875664 |
gttcttggagcttatgggcctaattacatgaaaaacaa |
18875701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 51622886 - 51622935
Alignment:
| Q |
60 |
ccattgatgactgttcttggagcttctgggcctaattacatgaaaaacaa |
109 |
Q |
| |
|
||||||||||| ||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
51622886 |
ccattgatgacggttcttggagcttgtggacctaattaaatgaaaaacaa |
51622935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University