View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_low_12 (Length: 450)
Name: NF1399_low_12
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Complemental strand, 4142893 - 4142484
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142893 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
4142794 |
T |
|
| Q |
113 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgcagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4142793 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataatatgggtttgtctaatatatatcctaaatgcagt |
4142694 |
T |
|
| Q |
213 |
ggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacgaa |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
4142693 |
ggttatatgccacctgaatatgcaatggaggggcttttctcagagaaatcagatgtctatagtttcggagttttattgctagagcttgttagtggacgaa |
4142594 |
T |
|
| Q |
313 |
gaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattacatatactataatacaagaag |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4142593 |
gaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatagtcgatgtctttattacatatactataatacaagaag |
4142494 |
T |
|
| Q |
413 |
tgttaacaat |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
4142493 |
tgttaacaat |
4142484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 4150905 - 4150529
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcat |
112 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
4150905 |
aatatcagacttcggtttagcaagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtagtactatctcat |
4150806 |
T |
|
| Q |
113 |
cggacattacaatgttggaattaatattacaaataaattgtttcattattatttgtcttattataacatgggtttgtc-taacatatatcctaaatgcag |
211 |
Q |
| |
|
|| |||| ||||||||||||| | |||||||| | | |||| ||| |||||| | ||| | |||| || | |||||||| | |||||||||| |
|
|
| T |
4150805 |
ttgatattataatgttggaattagtgttacaaatgagtggtttaatt-ttattttttttact------tggggttatagtaacatatgttctaaatgcag |
4150713 |
T |
|
| Q |
212 |
tggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacga |
311 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||| ||| ||||||| ||| || |
|
|
| T |
4150712 |
tggttatatgccgcctgaatatgcaatggaggggcttttctctgaaaaatcagatgtctatagctttggggttctattgctggagattgttagcggaaga |
4150613 |
T |
|
| Q |
312 |
agaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattacata |
395 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| || |||||| ||| ||| |||||||| |
|
|
| T |
4150612 |
agaaatagtagcttttctcatcacgaggatactcttagccttgtaggctttgtaagtctaaatactccatgccttcattacata |
4150529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 390
Target Start/End: Complemental strand, 4120456 - 4120090
Alignment:
| Q |
14 |
atatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagtaatcatatctcatc |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
4120456 |
atatcagactttgggttagctagaattgttaaaggtggagaagatgatgaagctaacacgaaaagggttgtcggaacttagtaagtaatcctatctcatt |
4120357 |
T |
|
| Q |
114 |
ggacattacaatgttggaattaatatt---acaaataaattgtttcattattatttgtcttattataacatgggtttgtctaacatatatcctaaatgca |
210 |
Q |
| |
|
| |||||| | |||||| |||| || | |||||| |||||||| || |||| | | |||||||||||| |||| |||||||| |
|
|
| T |
4120356 |
gaacattatattgttgggattattaatgctacaaatgaattgtttaatcattactcctgttattataacat-------------atatgctttaaatgca |
4120270 |
T |
|
| Q |
211 |
gtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttagtggacg |
310 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||| |||| ||||| || |
|
|
| T |
4120269 |
gtggttatatgccgccagaatatgcaatggaggggcttttctctgagaaatcagatgtatatagctttggggttttattgctagagattgtcagtgggcg |
4120170 |
T |
|
| Q |
311 |
aagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttatt |
390 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
4120169 |
aagaaatacgagcttttatcacagcgaggattcacttagccttgtaggctttgtaagtttatatacgcaatgtctttatt |
4120090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 202 - 392
Target Start/End: Complemental strand, 4130359 - 4130169
Alignment:
| Q |
202 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgt |
301 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||| |
|
|
| T |
4130359 |
ctaaatgtagtggttatatgccgcctgaatatgcaatggggggacttttctcagagaaatcagatgtatatagctttggtgttttattgctagagattgt |
4130260 |
T |
|
| Q |
302 |
tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatatactcgatgtctttattac |
392 |
Q |
| |
|
|| ||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||||||| ||| || || |||||| |||||| |
|
|
| T |
4130259 |
aagcggacgaagaaataacagcttttatcaaaatgaggattctcttagccttgttggctttgtaagtctatgtaatccatgtctctattac |
4130169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 202 - 374
Target Start/End: Complemental strand, 4159723 - 4159551
Alignment:
| Q |
202 |
ctaaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgt |
301 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||||||| | ||| |||| |
|
|
| T |
4159723 |
ctaaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttagagattgt |
4159624 |
T |
|
| Q |
302 |
tagtggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagtttatat |
374 |
Q |
| |
|
||| || |||||||| ||||||||||| |||| ||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4159623 |
tagcggccgaagaaacagtagcttttaccacaacgaagattctcttagccttgttggctttgtaagtatatat |
4159551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 4130541 - 4130454
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130541 |
aatatcagactttggtttagctagaattgttaaaggtggagaaggtgatgaagctaacacaaaaagggttgttggaacttagtaagta |
4130454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 4159922 - 4159837
Alignment:
| Q |
13 |
aatatcagactttggtttagctagaattgttaaatttggagaagatgatgaagctaacacaaaaagggttgttggaacttagtaag |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
4159922 |
aatatcagactttggtttagctagaattgttaaaggaggagaagatgatgaaacaaacacaaatagggttgttggaacttagtaag |
4159837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 2723579 - 2723496
Alignment:
| Q |
203 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2723579 |
taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtttt |
2723496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 2745409 - 2745326
Alignment:
| Q |
203 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2745409 |
taaatgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttggggtttt |
2745326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 2712039 - 2711956
Alignment:
| Q |
203 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||||||| |||||| | || |||||||||||| | ||| | || ||||||||||||||| | | ||||||||||||||| |
|
|
| T |
2712039 |
taaatgcagtggatatatgtctccagaatatgcaatgaaagggttgttttcagagaaatcagatatttttagttttggagtttt |
2711956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 2716956 - 2716873
Alignment:
| Q |
203 |
taaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||||||||| || | || ||||||||||||||||| | ||||||||| ||||| |
|
|
| T |
2716956 |
taaatgcagtggatacatgtctccggaatatgcaatggaaggattgttttcagagaaatcagatgtatttagttttggggtttt |
2716873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 2704386 - 2704306
Alignment:
| Q |
206 |
atgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
||||||||| |||||| | || ||||| |||||||||||| | || ||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
2704386 |
atgcagtggatatatgtctccagaatacgcaatggaggggttgttttcagagaaatcagatgtttttagctttggggtttt |
2704306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 368
Target Start/End: Original strand, 19939299 - 19939459
Alignment:
| Q |
205 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttag |
304 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| | || || || || || ||||| ||||||| ||| |||||||||||| | || ||| || |||| |
|
|
| T |
19939299 |
aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag |
19939398 |
T |
|
| Q |
305 |
tggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagt |
368 |
Q |
| |
|
|||| |||||||| ||||||||| || || || ||||||| |||| |||| ||||||||| |
|
|
| T |
19939399 |
tggaagaagaaattcaagcttttatgactgc---gactctcttacccttttaggatttgtaagt |
19939459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 368
Target Start/End: Original strand, 19970438 - 19970598
Alignment:
| Q |
205 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagttttattgctcgagcttgttag |
304 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| | || || || || || ||||| ||||||| ||| |||||||||||| | || ||| || |||| |
|
|
| T |
19970438 |
aatgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagttttacttcttgagattattag |
19970537 |
T |
|
| Q |
305 |
tggacgaagaaatagtagcttttatcacagcgaggattctcttagccttgtaggctttgtaagt |
368 |
Q |
| |
|
|||| |||||||| ||||||||| || || || ||||||| |||| |||| ||||||||| |
|
|
| T |
19970538 |
tggaagaagaaattcaagcttttatgactgc---gactctcttacccttttaggatttgtaagt |
19970598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 20062461 - 20062380
Alignment:
| Q |
205 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
||||||||||||||||| | || ||||| |||||| | || ||||| ||||||||||||||||| | ||| ||||| ||||| |
|
|
| T |
20062461 |
aatgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgtttt |
20062380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 20289417 - 20289499
Alignment:
| Q |
204 |
aaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
||||||||||||||||| | || ||||| |||||| | || || || ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
20289417 |
aaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgtttt |
20289499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 20285107 - 20285188
Alignment:
| Q |
205 |
aatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||| | || | || ||||||||||||||| | | ||||||||| ||||| |
|
|
| T |
20285107 |
aatgcagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgtttt |
20285188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 40823734 - 40823652
Alignment:
| Q |
204 |
aaatgcagtggttatatgccaccggaatatgcaatggaggggcttttctcagagaaatcagatgtctatagttttggagtttt |
286 |
Q |
| |
|
|||||||| ||||||||| | || |||||||| ||| | || || || ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
40823734 |
aaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgtttt |
40823652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University