View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_15 (Length: 440)
Name: NF1399_low_15
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 26062062 - 26061657
Alignment:
| Q |
30 |
ttctctcccaccttcaggttcaagcatttcctt-tgtatctcttatttcagacttttaggtttcaattgttctcacatttgattttagacttgtagaatt |
128 |
Q |
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|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26062062 |
ttctctcccaccttcaggttcatgcatttccttgtctatctcttatttcagacttttaggtttcaattgttctcacatttgattttaggcttgtagaatt |
26061963 |
T |
|
| Q |
129 |
gattt-gacattttttaatgttctcaagtataattaattaatt----ttcttctacaattgattttagccctgaatttagttttacatgaatgtctctaa |
223 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26061962 |
gattttgacattttttaatgttctcaagtataattaattaattaattttcttctacaattgattttagccctgaatttactgttacatgaatgtctctaa |
26061863 |
T |
|
| Q |
224 |
acacaaattactttacataaaactcaacaattctctgattagatggaaagttggtgagtgannnnnnnngaagatggaattttcattttagtcctcaaat |
323 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26061862 |
acacaaattactttacataaaacttaacaattctctgattagatggaaagttggtgagtgaatttttttgaagatggaattttcattttagtcctcaaat |
26061763 |
T |
|
| Q |
324 |
ttagtgttggacaatttttccaatgaaaacgaaatttcaaaatttacccggaaatttaaaatctcgatcgcactagtcgtctcaacaatcagttcatcta |
423 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26061762 |
gtagtgttggtcaacttttccaatgaaaacgaaatttcaaaatttacccggaaatttaaaatctcgatcgcactagtcgtctcaacaatcaattcatcta |
26061663 |
T |
|
| Q |
424 |
tgccta |
429 |
Q |
| |
|
|||||| |
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| T |
26061662 |
tgccta |
26061657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 429
Target Start/End: Complemental strand, 26067801 - 26067396
Alignment:
| Q |
30 |
ttctctcccaccttcaggttcaagcatttcctt-tgtatctcttatttcagacttttaggtttcaattgttctcacatttgattttagacttgtagaatt |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26067801 |
ttctctcccaccttcaggttcatgcatttccttgtctatctcttatttcagacttttaggtttcaattgttctcacatttgattttaggcttgtagaatt |
26067702 |
T |
|
| Q |
129 |
gattt-gacattttttaatgttctcaagtataattaattaatt----ttcttctacaattgattttagccctgaatttagttttacatgaatgtctctaa |
223 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26067701 |
gattttgacattttttaatgttctcaagtataattaattaattaattttcttctacaattgattttagccctgaatttactgttacatgaatgtctctaa |
26067602 |
T |
|
| Q |
224 |
acacaaattactttacataaaactcaacaattctctgattagatggaaagttggtgagtgannnnnnnngaagatggaattttcattttagtcctcaaat |
323 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26067601 |
acacaaattactttacataaaacttaacaattctctgattagatggaaagttggtgagtgaatttttttgaagatggaattttcattttagtcctcaaat |
26067502 |
T |
|
| Q |
324 |
ttagtgttggacaatttttccaatgaaaacgaaatttcaaaatttacccggaaatttaaaatctcgatcgcactagtcgtctcaacaatcagttcatcta |
423 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26067501 |
gtagtgttggtcaacttttccaatgaaaacgaaatttcaaaatttacccggaaatttaaaatctcgatcgcactagtcgtctcaacaatcaattcatcta |
26067402 |
T |
|
| Q |
424 |
tgccta |
429 |
Q |
| |
|
|||||| |
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|
| T |
26067401 |
tgccta |
26067396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 34469227 - 34469289
Alignment:
| Q |
105 |
atttgattttagacttgtagaattgattt-gacattttttaatgttctcaagtataattaatt |
166 |
Q |
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|||||||||||||| || |||||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
34469227 |
atttgattttagacgtgacgaattgattttgacatgttttgatgttctcaagtataattaatt |
34469289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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