View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_17 (Length: 428)
Name: NF1399_low_17
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 9965468 - 9965861
Alignment:
| Q |
30 |
ggtataacggcaattttatcaaaatcacccactttaatttttcaaaagctacaaagtcattgtaatttttcaaa-gctacaaaatgtagcttctgaaaat |
128 |
Q |
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| T |
9965468 |
ggtataacggcaattttatcaaaatcacccactttaattttgcaaaagctacaaagtcattgtaatttttcaaaagctacaaaatgtagcttctgaaaat |
9965567 |
T |
|
| Q |
129 |
caaggtgacttattgtgattctgaaatcctcgtaatggtaacaaacatgcactttgtagcttcttgttatcacagtggaaatggatctggacgagcgttt |
228 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
9965568 |
caaggtgactcattgtgattctgaaatcctcgtaatggtaacaaacatgcactttgtagcttcttgttatcacagtggaaatggatttcgacgagcgttt |
9965667 |
T |
|
| Q |
229 |
tccttcattggacgtgaatcatttctgaagatgctctaatgttttccctcagtgaacctttcctagagtacatatagggcaaaatgtagacgttaccaac |
328 |
Q |
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| T |
9965668 |
tccttcattggacgtgaatcatttctgaagatgctctaatgttttccctcagtgaacctttcctagagtacatatagggcaaaatgtagacgttaccaac |
9965767 |
T |
|
| Q |
329 |
tagaaatttgattagtttgacaaactc--tgttagaatttcgacttaacaggattgaattcttttgctttcgttttctttattgggtctctgct |
420 |
Q |
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| T |
9965768 |
tagaagtttgattagtttgacaaactcagtgttagaatttcgacttaacaggattgaattcttttgctttcgttttctttattgggtttctgct |
9965861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 20514752 - 20514785
Alignment:
| Q |
101 |
aaagctacaaaatgtagcttctgaaaatcaaggt |
134 |
Q |
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| T |
20514752 |
aaagctacaaagtgtagcttctgaaaatcaaggt |
20514785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 34096619 - 34096660
Alignment:
| Q |
203 |
gtggaaatggatctggacgagcgttttccttcattggacgtg |
244 |
Q |
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| T |
34096619 |
gtggaaatggatgtgaacgtgcgttttccttcattggacgtg |
34096660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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