View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_18 (Length: 422)
Name: NF1399_low_18
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 410
Target Start/End: Original strand, 4165038 - 4165423
Alignment:
| Q |
29 |
aaataccactctgcattcaagtgcactaga----taaaggtcagttctctgcaaatgctagactacttttaggtaaggtatgtgccaaagctgggctacg |
124 |
Q |
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| T |
4165038 |
aaataccactctgcattcatgtgcactagatagataaaggtcagttctctgcaaatgctagactactttcaggtaaggtatgtgccaaagctgggctacg |
4165137 |
T |
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| Q |
125 |
acagcaaatgaggtgcaatttgagaatctttgggatttgggtggtgataaaaaagcaaaacaatgatgaaatagttggtgtagactttaaaaatccaggg |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165138 |
acagcaaatgaggtgcaatttgagaatctttgggatttgggtggtgataaaaaagcaaaacaatgatgaaatagttggtgtagactttaaaaatccaggg |
4165237 |
T |
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| Q |
225 |
tgtataagtgtcgtcacataagtgtagaagaaaattctataattttgtgagagatgaacgtggtcctctctttatagagctttaaaaccagttctgatca |
324 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165238 |
tgtataagtgtcgtcacataagtgtagaggaaaattctataattttgtgagagatgaacgtggtcctctctttatagagctttaaaaccagttctgatca |
4165337 |
T |
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| Q |
325 |
tggcaggtaaaggtgcattaatattggtgcacaaatgaatgttacagttgagacaattaagcctttggtcctctttatagtcccta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4165338 |
tggcaggtaaaggtgcattaatattggtgcacaaatgaatgttacagttgagacaattaagcctttggtcctctttatagtcccta |
4165423 |
T |
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