View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_19 (Length: 411)
Name: NF1399_low_19
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 190 - 381
Target Start/End: Complemental strand, 36727073 - 36726882
Alignment:
| Q |
190 |
aagaaataatacatagataagttatcagcttattgatttatgctcagaataatgcatagcacaagattttcccaatagggttgacggcacatatatagtg |
289 |
Q |
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| T |
36727073 |
aagaaataatacatagataagttatcagcttattgatttatgctcagaataatgcatagcacaagattttcccaatagggttgacggcacatatatagtg |
36726974 |
T |
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| Q |
290 |
attccatatcttctttatgtctttttcttctcatttgtggtgttttatatctttttcgtgtttcctacccttctttgcatcgtcttcatctc |
381 |
Q |
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| T |
36726973 |
attccatatcttctttatgtctttttcttctcatttgtggtgttttatatctttttcgtgtttcctacccttctttgcatcgtcttcttctc |
36726882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 36727268 - 36727097
Alignment:
| Q |
1 |
catagtgttttccttttcggttattgttaaaagagtcactctctacacagtacgatgcattagagtatattatttgtatacaatatagaatgatgccact |
100 |
Q |
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| T |
36727268 |
catagtgttttccttttcggttattgttaaaagagtcactctctacacagtacgatacattagagtatattatttgtatacaatatagaatgatgccact |
36727169 |
T |
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| Q |
101 |
gaactgactgaaggcaaaatgttaagcttttatttattttgaaaaagctaaatgaatattattaactaactc |
172 |
Q |
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| T |
36727168 |
gaactgactgaaggcaaaatgttaagcttttatttattttgaaaaagctaaatgaatattattaactaactc |
36727097 |
T |
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