View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_2 (Length: 778)
Name: NF1399_low_2
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 136 - 676
Target Start/End: Original strand, 46302864 - 46303404
Alignment:
| Q |
136 |
gtcattaacagcaatgtctatatagtttactgcaattagaattttatagtgtaattttgtttattgatataaatagtgtaatttaaaggaaaattttcct |
235 |
Q |
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| T |
46302864 |
gtcattaacagcaatgtctatatagtttactgcaattagaattttatagtgtaattttgattattgatataaatagtgtaatttaaaggaaaattttcct |
46302963 |
T |
|
| Q |
236 |
ttaatccaatattttgtcaatgtgaggtgctgcttttgacttccaatttgcacaagcatagtgattaattaaactgcctattttttccaaggatgtgtat |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46302964 |
ttaatccaatattttgtcaatgtgaggtgctgcttttgacttccaatttgcacaagcatagtgattaattaaactgcctattttttccaaggatgtgtat |
46303063 |
T |
|
| Q |
336 |
gcattgagtcaaaaaatatgcatgtattagtaattttcctttttacttgttcttttatatctgtcaatcattttttccctgatggtgcagtttgcaacta |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303064 |
gcattgagtcaaaaaatatgcatgtattagtaattttcctttttacttgttcttttatatctgtcaatcattttttccctgatggtgcagtttgcaacta |
46303163 |
T |
|
| Q |
436 |
tacacaatatgtgctataataatgatattaaaagatcctatgtttgagattaatactacctgattaaggtgatgaatgtttggtaaatgcattaggacaa |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303164 |
tacacaatatgtgctataataatgatattaaaagatcctatgtttgagattaatactacctgattaaggtgatgaatgtttggtaaatgcattaggacaa |
46303263 |
T |
|
| Q |
536 |
gcattaatggcaatgaagtcttccttcaacaacatagctgacgttctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttt |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303264 |
gcattaatggcaatgaagtcttccttcaacaacatagctgacgttctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttt |
46303363 |
T |
|
| Q |
636 |
tctgtgataacgccagtcatgctcttactgttgtatctctg |
676 |
Q |
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| T |
46303364 |
tctgtgataacgccagtcatgctcttactgttgtatctctg |
46303404 |
T |
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