View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_26 (Length: 391)
Name: NF1399_low_26
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 381
Target Start/End: Original strand, 11859559 - 11859900
Alignment:
| Q |
52 |
caaagcaccactgaacccgaacgtgaac------gagagatcgtggagggttgtgctggaattcctcttttgattgtgttcgtagcgacggtgatgtaca |
145 |
Q |
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|||||||||||||||||||||||||||| | ||||| ||||| |||||||||||| ||||||||||||||||| ||||||||| ||| ||| | | |
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| T |
11859559 |
caaagcaccactgaacccgaacgtgaacctgaacgggagattgtggaaggttgtgctggagttcctcttttgattgtgatcgtagcgatggtaatgaaga |
11859658 |
T |
|
| Q |
146 |
agcaaagtggtgatagtgg------tgacaactggattccagaagcattggaaatgcttaagtttatctattacgacaatcttcccacttatcagaagtt |
239 |
Q |
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| T |
11859659 |
agcaaagtggtggtggtggtcgtggtgacaactggattccgaaagcattagaaacgcttaagtttatctattacgacaaccttcccacttatcagaagtt |
11859758 |
T |
|
| Q |
240 |
atgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttcttatcaatccagaa |
339 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11859759 |
atgcttcgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaa |
11859858 |
T |
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| Q |
340 |
caacaatttggtcaagcttgtttcgaagacattgttcctttg |
381 |
Q |
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| T |
11859859 |
caacaatttggtcaagcttgtttcaaagactttgttcctttg |
11859900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 112 - 381
Target Start/End: Original strand, 11827496 - 11827765
Alignment:
| Q |
112 |
cttttgattgtgttcgtagcgacggtgatgtacaagcaaagtggtgatagtggtgacaactggattccagaagcattggaaatgcttaagtttatctatt |
211 |
Q |
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| T |
11827496 |
cttttgatagtgatcgttgcaaaggtgatgacgaagcatagtggtgttggtggtgaagaatggattcgggaagcactagaaaaggtgaagcttatctatt |
11827595 |
T |
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| Q |
212 |
acgacaatcttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggac |
311 |
Q |
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| T |
11827596 |
acgacgatcttcccacttatcagaaattatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggac |
11827695 |
T |
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| Q |
312 |
tgctgaagggtttcttatcaatccagaacaacaatttggtcaagcttgtttcgaagacattgttcctttg |
381 |
Q |
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| T |
11827696 |
tggtgaagggtttcttatcaatccagaacaacaatttggtcatgcttgtttcgaagactttgttcctttg |
11827765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 12038482 - 12038604
Alignment:
| Q |
204 |
tatctattacgacaatcttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaa |
303 |
Q |
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| T |
12038482 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaa |
12038581 |
T |
|
| Q |
304 |
ctctggactgctgaagggtttct |
326 |
Q |
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| T |
12038582 |
ctttggacggctgaaggatttct |
12038604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 377
Target Start/End: Complemental strand, 11902770 - 11902628
Alignment:
| Q |
235 |
aagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttcttatcaatc |
334 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| | || || |
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| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
11902671 |
T |
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| Q |
335 |
cagaacaacaatttggtcaagcttgtttcgaagacattgttcc |
377 |
Q |
| |
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| T |
11902670 |
cacaacaacaattttgtcgaccttgtttcaatgactttgttcc |
11902628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 11731387 - 11731508
Alignment:
| Q |
199 |
aagtttatctattacgacaatcttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattga |
298 |
Q |
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||||||| |||||||| |||||||||| | | | || || |||||||||| ||||||||||||||||||| || ||||||||||||| |||||||| | |
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| T |
11731387 |
aagtttagatattacgaggatcttcccacatgttataaattgtgctttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaa |
11731486 |
T |
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| Q |
299 |
ttcaactctggactgctgaagg |
320 |
Q |
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| T |
11731487 |
ttcaactttggtttgctgaagg |
11731508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 12038623 - 12038674
Alignment:
| Q |
330 |
caatccagaacaacaatttggtcaagcttgtttcgaagacattgttcctttg |
381 |
Q |
| |
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||||||||||||||||||||||| |||||||||| | ||| ||||||||||| |
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| T |
12038623 |
caatccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttg |
12038674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 11975068 - 11974974
Alignment:
| Q |
231 |
tcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactgctgaagggtttc |
325 |
Q |
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| T |
11975068 |
tcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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