View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_30 (Length: 372)
Name: NF1399_low_30
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 30 - 360
Target Start/End: Complemental strand, 24043759 - 24043429
Alignment:
| Q |
30 |
gtaatataatacatttcattagttataaagatatcaatttattaaaaagaattttaaaccaagcaagttctaaaatcaatgaaaagcttctcaattccca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043759 |
gtaatataatacatttcattagttataaagatatcaatttattaaaaagaattttaaaccaagcaagttctaaaatcaatgaaaagcttctcaattccca |
24043660 |
T |
|
| Q |
130 |
gatttgatctaggacatgaagtcatttgtgagacagtgataagttcaagtcaactttattatattacattattgaaatgcaatgtcaactttttaatcaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043659 |
gatttgatctaggacatgaagtcatttgtgagacagtgataagttcaagtcaactttattatattacattattgaaatgcaatgtcaactttttaatcaa |
24043560 |
T |
|
| Q |
230 |
tattgttttaaactaaacaaatgtaatatccaatttataaattattttgtatttttaaaatcaacattttaactcccttttcaaagtacatcaagatttg |
329 |
Q |
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| T |
24043559 |
tattgttttaaactaaacaaatgtaatatccaatttataaattattttgtatttttaaaatcaacattttaactcccttttcaaagtacatcaagattag |
24043460 |
T |
|
| Q |
330 |
aacttatttcaattattattgtcagaatatt |
360 |
Q |
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| T |
24043459 |
aacttatttcaattattattgtcagaatatt |
24043429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 188 - 360
Target Start/End: Original strand, 4278569 - 4278752
Alignment:
| Q |
188 |
ttatattacattattgaaatgcaatgtcaactttttaatcaatattgttttaaactaaacaaatgtaatatccaatttataaat-----------tattt |
276 |
Q |
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| T |
4278569 |
ttatactacattgttgaaatgcaatgtcaactttttaatcaatattgttttaaactaaacaaatataatatcgtatttataaataattattacattattt |
4278668 |
T |
|
| Q |
277 |
tgtatttttaaaatcaacattttaactcccttttcaaagtacatcaagatttgaacttatttcaattattattgtcagaatatt |
360 |
Q |
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| T |
4278669 |
tgtatttttaaattcaacattttaactcccttttcaaagtacatcaagatttgaacttatttcaattattattgtcagattatt |
4278752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 4278442 - 4278569
Alignment:
| Q |
30 |
gtaatataatacatttcattagttataaagatatcaatttattaaaaagaattttaaaccaagcaagttctaaaatcaatgaaaagcttctcaattccca |
129 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
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| T |
4278442 |
gtaatatagtaaatttcattagttataaaaatatcaatttattaaaaagaattttaaaccaagcaagttctaaagtcaatgaaaagctttcgaattctca |
4278541 |
T |
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| Q |
130 |
gatttgatctaggacatgaagtcatttgt |
158 |
Q |
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| T |
4278542 |
aatttgatctaggac-tgaagtcatttgt |
4278569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 4276520 - 4276583
Alignment:
| Q |
84 |
taaaccaagcaagttctaaaatcaatgaaaagcttctcaattcccagatttgatctaggacatg |
147 |
Q |
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|||||||||||||||||||| | |||||||| ||||| | ||| | ||||||||||| |||||| |
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| T |
4276520 |
taaaccaagcaagttctaaagttaatgaaaaccttcttatttctcggatttgatctaagacatg |
4276583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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