View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1399_low_32 (Length: 362)

Name: NF1399_low_32
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1399_low_32
NF1399_low_32
[»] chr4 (5 HSPs)
chr4 (44-152)||(39711977-39712085)
chr4 (276-359)||(39712202-39712285)
chr4 (58-148)||(32613783-32613873)
chr4 (218-254)||(39712145-39712181)
chr4 (58-148)||(35689930-35690018)
[»] chr2 (2 HSPs)
chr2 (59-135)||(3536701-3536777)
chr2 (58-142)||(9150260-9150344)
[»] chr1 (1 HSPs)
chr1 (102-148)||(28651548-28651594)
[»] chr6 (1 HSPs)
chr6 (66-148)||(34908365-34908446)
[»] chr3 (1 HSPs)
chr3 (55-125)||(26594402-26594472)
[»] chr8 (1 HSPs)
chr8 (116-148)||(2385964-2385996)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 39711977 - 39712085
Alignment:
Q  44 gaaaggtgcattcatattaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtattaattagatg 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  39711977 gaaaggtgcattcatattaactattgatatattttcattatcattaatgcaaagtaaagaataataattttagagtgatgcacatagtattaattagata 39712076  T
Q  144 gtacagttg 152  Q
    |||||||||    
T  39712077 gtacagttg 39712085  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 39712202 - 39712285
Alignment:
Q  276 ctttatgccgaaaatataggaaattttgtttctaatcttcataaaatctgttcttgtttcttacagcataatattcttcgacat 359  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  39712202 ctttatgctgaaaatataggaaattttgtttctaatcttcataaaatttgttcttgtttcttaaagcataatatttttcaacat 39712285  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 32613783 - 32613873
Alignment:
Q  58 tattaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtattaattagatggtaca 148  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||   |||||||| ||  ||||||||||||| |||||| ||||||||||||    
T  32613783 tattaaccattgatgtattttcattatcataaatgaaaagtagaaaataataacttgggagtgatgcacattgtattagttagatggtaca 32613873  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 39712145 - 39712181
Alignment:
Q  218 cttccaaatgtgatatagaagagaagaattatcaaag 254  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39712145 cttctaaatgtgatatagaagagaagaattatcaaag 39712181  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 35690018 - 35689930
Alignment:
Q  58 tattaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtattaattagatggtaca 148  Q
    |||||||||||||| || |||||||||||| |||||||||| |  ||||||||  |  |||| |||  |||||| ||||||||||||||||    
T  35690018 tattaactattgatgtactttcattatcataaatgcaaagttaaaaataataacctgggagtaatg--catagttttaattagatggtaca 35689930  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 3536701 - 3536777
Alignment:
Q  59 attaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtatta 135  Q
    ||||||||||||||| |||| |||||||| ||||||||||  |||||||||| || ||||||||||| ||| |||||    
T  3536701 attaactattgatatttttttattatcataaatgcaaagtggtgaataataacttaagagtgatgcatataatatta 3536777  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 9150344 - 9150260
Alignment:
Q  58 tattaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtattaattagat 142  Q
    ||||||| |||| | ||||||||||||||||| |   ||||   ||||||||||||  |||||||||||||||||||||||||||    
T  9150344 tattaaccattggtgtattttcattatcattactattaagtgcagaataataatttgggagtgatgcacatagtattaattagat 9150260  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 28651548 - 28651594
Alignment:
Q  102 gaataataattttagagtgatgcacatagtattaattagatggtaca 148  Q
    ||||||||| || ||||||||||||||||||||||||| ||||||||    
T  28651548 gaataataaattgagagtgatgcacatagtattaattacatggtaca 28651594  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 34908446 - 34908365
Alignment:
Q  66 attgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgcacatagtattaattagatggtaca 148  Q
    |||||| |||||||| |||||| |||||||||| |  ||| || | ||  ||||||||| |||||||||||||||||||||||    
T  34908446 attgatgtattttcactatcataaatgcaaagtgaa-aatgattacttgggagtgatgctcatagtattaattagatggtaca 34908365  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 26594402 - 26594472
Alignment:
Q  55 tcatattaactattgatatattttcattatcattaatgcaaagtaatgaataataattttagagtgatgca 125  Q
    ||||||||| ||||| | ||||||||||||||| ||||| |||||| |||| |||| || || ||||||||    
T  26594402 tcatattaattattggtgtattttcattatcataaatgctaagtaaagaattataacttaagggtgatgca 26594472  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 2385996 - 2385964
Alignment:
Q  116 gagtgatgcacatagtattaattagatggtaca 148  Q
    |||||||||||||||||||| ||||||||||||    
T  2385996 gagtgatgcacatagtattagttagatggtaca 2385964  T

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