View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_low_34 (Length: 360)
Name: NF1399_low_34
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 2149713 - 2150032
Alignment:
| Q |
13 |
aatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2149713 |
aatataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactcaggcaaatttctacataaagggcaagtag |
2149812 |
T |
|
| Q |
113 |
cattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2149813 |
cattcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagaca |
2149912 |
T |
|
| Q |
213 |
tatggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2149913 |
tatggaacaaacattgtcaatgaattttggcaattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacaca |
2150012 |
T |
|
| Q |
313 |
aaccaatgaggttcctgatt |
332 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2150013 |
aaccaatgaggttcctgatt |
2150032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 2140712 - 2141023
Alignment:
| Q |
19 |
atgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtagcattca |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| | ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
2140712 |
atgaagattgatataaa-ttgtagaaagaggcacaaagagat-aaccaaagcacgtgcatcactcaggcaaatttttacataaagggcaagtagcattca |
2140809 |
T |
|
| Q |
119 |
tcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacatatgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2140810 |
tcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacatatgga |
2140909 |
T |
|
| Q |
219 |
acaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaa |
318 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2140910 |
acaaacattgtcaatggacttaggcaattgtccactctctgctagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaaccaa |
2141009 |
T |
|
| Q |
319 |
tgaggttcctgatt |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2141010 |
tgaggttcctgatt |
2141023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 2145241 - 2145543
Alignment:
| Q |
15 |
tataatgaagattgatataaaattgtagaaagatgcacaaagaggttaaccaaagcacatgcatcactctggcaaatttctacataaagggcaagtagca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2145241 |
tataatgaagattgatataaaattgtagagagatgcacaaagagat-aaccaaagcacatgcatcactcaggcaaatttctacataaagggcaagtagca |
2145339 |
T |
|
| Q |
115 |
ttcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatacttcttaatgtctccattggtttgtactcactaagacata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2145340 |
ttcatcttgagccaaacatctatacaatctgcatggaaatgatgattacattgaggtatactccttaatgtctccatgggtttgtactcaccaagacata |
2145439 |
T |
|
| Q |
215 |
tggaacaaacattgtcaatgaatttaggcaattgtccattctctgcaagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaa |
314 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2145440 |
tggaacaaacattgtcaatggacttaggcaattgtccactctctactagttgaatctttggatattgttctatccttgaatgatcaagtccaaacacaaa |
2145539 |
T |
|
| Q |
315 |
ccaa |
318 |
Q |
| |
|
|||| |
|
|
| T |
2145540 |
ccaa |
2145543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 42004054 - 42003993
Alignment:
| Q |
81 |
ctctggcaaatttctacataaagggcaagtagcattcatcttgagccaaacatctatacaat |
142 |
Q |
| |
|
|||||| ||||||| ||| |||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
42004054 |
ctctggaaaatttcgacacaaagggcaggtagcatttgtcttgagccatccatctatacaat |
42003993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University