View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1399_low_36 (Length: 355)

Name: NF1399_low_36
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1399_low_36
NF1399_low_36
[»] chr1 (1 HSPs)
chr1 (34-346)||(47161540-47161838)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 47161540 - 47161838
Alignment:
Q  34 tcttaacatataatgttcaagatccatttttcatttgatatatatgagattattaacattattgataagtattaatattaataatcttctcccccatcgt 133  Q
    |||||||||||||||||||| ||| |||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47161540 tcttaacatataatgttcaacatcaattttttatttgatat--atgagattattaacattattgataagtattaatattaataatcttctcccccaacgt 47161637  T
Q  134 gagtccattcattcttacggatgtgctttccctccatggagatctgataccaaagttggatcatgaagaagatccgaggatcatcgcattggactttgaa 233  Q
    |||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||           ||| |||||||||||||||||||||    
T  47161638 gagttcattcattcttacgaatgtgctttccctccatagggatctgataccaaagttggatcat----------agagaatcatcgcattggactttgaa 47161727  T
Q  234 caatcacttaagcgaacacgtcacattttgactcaaaacattaacacgttcaattaatggactctctcaccaatttatggactttacaaattaattcacc 333  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  47161728 caatcacttaagtgaacacgtcacattttgactcaaaacattaacacgttcaattaatgga--ctctcaccaattcatggactttacaaattaattcacc 47161825  T

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