View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1399_low_4 (Length: 591)

Name: NF1399_low_4
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1399_low_4
NF1399_low_4
[»] chr1 (4 HSPs)
chr1 (1-518)||(31279308-31279825)
chr1 (1-46)||(4449663-4449708)
chr1 (1-46)||(9826485-9826530)
chr1 (4-45)||(9812092-9812133)
[»] chr5 (1 HSPs)
chr5 (1-48)||(40235033-40235080)
[»] chr4 (2 HSPs)
chr4 (1-48)||(39936151-39936198)
chr4 (1-45)||(28745671-28745715)
[»] chr6 (6 HSPs)
chr6 (1-46)||(3894883-3894928)
chr6 (1-46)||(24976370-24976415)
chr6 (1-46)||(24977801-24977846)
chr6 (1-44)||(12770803-12770846)
chr6 (1-44)||(12777058-12777101)
chr6 (4-44)||(12766791-12766831)
[»] chr3 (6 HSPs)
chr3 (1-46)||(16724904-16724949)
chr3 (1-46)||(18177774-18177819)
chr3 (1-44)||(20204893-20204936)
chr3 (1-44)||(24835101-24835144)
chr3 (1-44)||(22261736-22261779)
chr3 (1-44)||(22266720-22266763)
[»] chr2 (3 HSPs)
chr2 (1-46)||(43822042-43822087)
chr2 (1-46)||(44909797-44909842)
chr2 (1-45)||(14106096-14106140)


Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 31279308 - 31279825
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgatttatgttaaatttttaacttacatataatatgtagtttctctgcatattgcattca 100  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  31279308 ctgtgggttatgggcccaccacgcttccgctgcgccactctgatttatattaaaattttaacttacatataatatgtagtttctcttcaaattgcattca 31279407  T
Q  101 atggtcaactgttatatttgcaactttgtgctcgctgcagttcgtattccatgatcattgtaacattcttttaatttcttgtcaatcattcttaaaggat 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279408 atggtcaactgttatatttgcaactttgtgcttgctgcagttcgtattccatgatcattgtaacattcttttaatttcttgtcaatcattcttaaaggat 31279507  T
Q  201 tctgggggtattggtctattgccttattccagcaaatagcttctctaggaaataacattgctatccaaattgctgctggtagcagccttaaggttatgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279508 tctgggggtattggtctattgccttattccagcaaatagcttctctaggaaataacattgctatccaaattgctgctggtagcagccttaaggttatgca 31279607  T
Q  301 ttaaaccatattttatggaatatgatagaacaaatattatacatgttccatttttcttccttatagaaatgttttatttccacnnnnnnnacaggcagtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  31279608 ttaaaccatattttatggaatatgatagaacaaatattatacatgttccatttttcttccttatagaaatgttttatttccactttttttacaggcagtt 31279707  T
Q  401 tacaagcattatcatgcagatggaaaattgagcctacaacattttattgttttctttggaatctttgaactgttactttctcaacttcctgatatccact 500  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279708 tacaagcattatcatgcagatggaaaattgagcctgcaacattttattgttttctttggaatctttgaactgttactttctcaacttcctgatatccact 31279807  T
Q  501 cattgagatgggttaatg 518  Q
    ||||||||||||||||||    
T  31279808 cattgagatgggttaatg 31279825  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4449663 - 4449708
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  4449663 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 4449708  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9826485 - 9826530
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  9826485 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 9826530  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 9812092 - 9812133
Alignment:
Q  4 tgggttataggcccaccacacttccgctgcgccactctgatt 45  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  9812092 tgggttatgggcccaccacgcttccgctgcgccactctgatt 9812133  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40235033 - 40235080
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgatttat 48  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  40235033 ctgtgggttatgggcccaccacgcttccgctgcgccactctgatttat 40235080  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39936198 - 39936151
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgatttat 48  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  39936198 ctgtgggttatgggcccaccacgcttccgctgcgccactctgatttat 39936151  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28745671 - 28745715
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgatt 45  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  28745671 ctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 28745715  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3894883 - 3894928
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  3894883 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 3894928  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24976370 - 24976415
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  24976370 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24976415  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24977801 - 24977846
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  24977801 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 24977846  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12770803 - 12770846
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  12770803 ctgtgggttatgggcccaccacgcttccgctgcgccactctgat 12770846  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12777058 - 12777101
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  12777058 ctgtgggttatgggcccaccacgcttccgctgcgccactctgat 12777101  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 12766791 - 12766831
Alignment:
Q  4 tgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    |||||||| |||||||||  |||||||||||||||||||||    
T  12766791 tgggttatgggcccaccatgcttccgctgcgccactctgat 12766831  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16724904 - 16724949
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  16724904 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 16724949  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18177774 - 18177819
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  18177774 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 18177819  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20204936 - 20204893
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  20204936 ctgtgggttatgggcccaccacgcttccgctgcgccactctgat 20204893  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24835101 - 24835144
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||||||||    
T  24835101 ctgtgggttatgggcccaccacgcttccgctgcgccactctgat 24835144  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22261779 - 22261736
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||    
T  22261779 ctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22261736  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22266720 - 22266763
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgat 44  Q
    ||||||||||| |||||||||| |||||||||||||||| ||||    
T  22266720 ctgtgggttatgggcccaccacgcttccgctgcgccactttgat 22266763  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43822087 - 43822042
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  43822087 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 43822042  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44909842 - 44909797
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgattt 46  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||    
T  44909842 ctgtgggttatgggcccaccacgcttccgctgcgccactctgattt 44909797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14106096 - 14106140
Alignment:
Q  1 ctgtgggttataggcccaccacacttccgctgcgccactctgatt 45  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  14106096 ctgtgggttatgggcccaccacgcttccgctgcgccactctgatt 14106140  T

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