View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_40 (Length: 321)
Name: NF1399_low_40
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 9966669 - 9966393
Alignment:
| Q |
30 |
aacattaaacgacaatgtttcattccaaaccgggttcaagttgcgaaccaaggttcgagtttttcttctttgaccgtagaaatcaactactatgtacgga |
129 |
Q |
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| T |
9966669 |
aacattaaacgacaatgtttcattccaaaccgggttcaagtcgcgaaccaaggttcgagtttttcttctttgaccgtagaaatcaactactatgtacaga |
9966570 |
T |
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| Q |
130 |
cttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtgaccattttggtagttttgtggaaat |
229 |
Q |
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| T |
9966569 |
cttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaat |
9966470 |
T |
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| Q |
230 |
ggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaagatgaacggtggagtttgggat |
306 |
Q |
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| T |
9966469 |
ggtatgtttaagatttgtgtttatatgtgtattatttcatgcatggtataagaaagatgaacggtggagtttgggat |
9966393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 314
Target Start/End: Complemental strand, 9936500 - 9936221
Alignment:
| Q |
30 |
aacattaaacgacaatgtttcattccaaaccgggttcaagttgcgaaccaaggttcgagtttttcttctttgaccgtagaaatcaactactatgtacgga |
129 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |
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| T |
9936500 |
aacattaaatgacaatgtttcattccaaaccgggttcaagtcgcgaaccaaggttcgagtttttcttctttgaccgtggaaatcaattactatgtatgga |
9936401 |
T |
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| Q |
130 |
cttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtgaccattttggtagttttgtggaaat |
229 |
Q |
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| T |
9936400 |
cttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggtagttttgtggaaat |
9936301 |
T |
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| Q |
230 |
ggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaagatgaacggtggagtttgggatattgttgg |
314 |
Q |
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|||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
9936300 |
ggtgtgtttaaggtttgtgtttatatgtgtattatttcatgcatggtataagaa-----aacggtggagtttgggattttgttgg |
9936221 |
T |
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