View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_low_42 (Length: 313)
Name: NF1399_low_42
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 4644435 - 4644137
Alignment:
| Q |
1 |
caagccaaacatatgaacggaaaaaatgtatatcctgctttggtttcggataaaaggattacccctggcggatatggcttccaatgccaactttctgtag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4644435 |
caagccaaacatatgaacggaaaaaatgtatatcctgctttggtttcggataaaaagattacccctggcggatatggcttccaatgccaactttctgtag |
4644336 |
T |
|
| Q |
101 |
gctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccccacatggaatatgcaggagctggaggaaaggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4644335 |
gctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccccacatgggatatgcaggagctggaggaaaggt |
4644236 |
T |
|
| Q |
201 |
gtgattagaatgatatggtggataagccataatcggtctttgcatacaatagttcctttgcataggatctcttcgatttggccattttcgatcttcgtc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4644235 |
gtgattagaatgatatggtggataagccataatcggtctttgcatacaatagttcctttgcataggatctcttcgatttggccattttcgatcttcgtc |
4644137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 40801546 - 40801779
Alignment:
| Q |
69 |
cggatatggcttccaatgccaactttctgtaggctgccatagaggataacccggaggactccaaatcggtacaccagctgtttgacttccatgttggccc |
168 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| | |||||||| | | | | ||||| | | | ||||| |||||| ||||| ||| ||| |
|
|
| T |
40801546 |
cggaaatggtttccaatgccaactttctgtaggctgccacacgggataaccagaatggccccaaacctgcatgccagccgtttgagttccagattgtccc |
40801645 |
T |
|
| Q |
169 |
cacatggaatatgcaggagct---ggaggaaaggtgtgattagaatgatatggtggataa---gccataatcggtctttgcatacaatagttcctttgca |
262 |
Q |
| |
|
||||||| |||| ||||||| ||||||| ||| || ||||||| ||||| |||| | | |||||| |||||||| | ||||||||||||||| |
|
|
| T |
40801646 |
cacatgggatataaaggagctagaggaggaagggtatggttagaataatatgatggaggaccgggcataattggtctttgaagacaatagttcctttgag |
40801745 |
T |
|
| Q |
263 |
taggatctcttcgatttggccattttcgatcttc |
296 |
Q |
| |
|
| ||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
40801746 |
ttggatcccttggatttagccatttccgatcttc |
40801779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University