View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_43 (Length: 313)
Name: NF1399_low_43
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 26985600 - 26985396
Alignment:
| Q |
37 |
gatcttccacttttcggcagaatatgtcgtgaaactgaaagccaaggccaatcaagagcctaacacatctgtaatctcttcattccaatttttaaagaat |
136 |
Q |
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| T |
26985600 |
gatcttccacttttcggcagaatatgtcgtgaaactgaaagccaaggccaatcaagagcctaacacatctgtaatctcttcattccaatttttaaagaat |
26985501 |
T |
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| Q |
137 |
gtttagagatctataactcgtgcacgtcagctaccatgtgaatagagaatgagttgcaagatgactatagacaactgatcaagaatggtacctcctctgc |
236 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26985500 |
gtttagagatctataactcgtgcacgtcagctcccatgtgaatagagaatgagttgcaggatgactatagacaactgatcaagaatggtacctcctctgc |
26985401 |
T |
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| Q |
237 |
ctatg |
241 |
Q |
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||||| |
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| T |
26985400 |
ctatg |
26985396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 26999738 - 26999533
Alignment:
| Q |
37 |
gatcttccacttttcggcagaatatgtcgtgaaactgaaagccaaggccaatcaagagcctaacacatctgtaatctcttcattccaatttttaaagaat |
136 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| || |||| || | |
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| T |
26999738 |
gatcttccacttttcagcagaatccattgtgaaactgaaagccaaggacaatcaagagcctaacacatccgcaatctcttcattccagttgttaatgact |
26999639 |
T |
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| Q |
137 |
gt---ttagagatctataactcgtgcacgtcagctaccatgtgaatagagaatgagttgcaagatgactatagacaactgatcaagaatggtacctcctc |
233 |
Q |
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|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
26999638 |
gtagtttagaaatctataactcatgcacgtcagctaccatgtgaatagagaatgagttgcaagatgaccatagacaactgatcaagaatggtacctcttc |
26999539 |
T |
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| Q |
234 |
tgccta |
239 |
Q |
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|||||| |
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| T |
26999538 |
tgccta |
26999533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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