View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_44 (Length: 312)
Name: NF1399_low_44
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 4068529 - 4068803
Alignment:
| Q |
29 |
aaatgagactaagaaaaaagttttctcctataaatttggtggaaaatcaaatacaaacttgtatgatagatgattttgaatgattgtttactcatgtaca |
128 |
Q |
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| T |
4068529 |
aaatgagactaagaaaaaagttttctccaataaatttggtggaaaatcaaatacaaacttgtatgatagatgattttgaatgattgtttactcatgtaca |
4068628 |
T |
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| Q |
129 |
tatagagatatgcatttttaatagtgttgaaaatagaagaaaaataatcctacaacacttttaaaatatgaaaata--tgtaatccgattttgaagatgt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4068629 |
tatagagatatgcatttttaatagtgttgaaaatagaagaaaaataatcctacaacacttttaaaatatgaaaatatgtgtaatccgattttgaagatgt |
4068728 |
T |
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| Q |
227 |
gaagaagacagaaaaaacttaagttctttttatgtagttgatttgattttgaataaatgaagaaataatattcat |
301 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4068729 |
gaagaagaaagaaaaaacttaagttctttttatgcagttgatttgattttgaataaatgaagaaataatattcat |
4068803 |
T |
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