View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1399_low_48 (Length: 304)
Name: NF1399_low_48
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 102 - 284
Target Start/End: Complemental strand, 12743586 - 12743404
Alignment:
| Q |
102 |
agatctcgtgtgacattaatttagttatttatgtatgtaaaaaacacacatggaaatgcaattacttgctaatagtcacgagaacacaacgtagtagtaa |
201 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12743586 |
agatctcatgtgacactaatt-agttatttatgtatgaaaaaaatacacatgcaaatgcaattacttgctgatagtcacgagaacacaacgtagtagtaa |
12743488 |
T |
|
| Q |
202 |
aacacatgtaaatgttatgtgagagatcgaatacaacattgttttcatgaacac-aagtttttaacatctttctcttcttctat |
284 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
12743487 |
aacacatgtaaatgttatgcgaaagatcgaatacaacattgttttcatgaacacaaagtttttaacatctttctcttcctctat |
12743404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 284
Target Start/End: Original strand, 12755174 - 12755355
Alignment:
| Q |
90 |
tgaaaatcgtttagatctcgtgtgacattaatttagttatttatgtatgtaaaaaacacacatggaaatgcaattacttgctaatagtcacgagaacaca |
189 |
Q |
| |
|
|||| ||||| |||||||| ||||||| ||||| ||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
12755174 |
tgaagatcgtgtagatctcatgtgacactaatt-agttatttatgtatg-aaaaaacac----------gcaattactttcttatagtcacgagaacaca |
12755261 |
T |
|
| Q |
190 |
acgtagtagtaaaacacatgtaaatgttatgtgagagatcgaatacaacattgttttcatgaacacaagtttttaacatctttctcttcttctat |
284 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12755262 |
acgtagtagtaaaacacatgtaaatgtaatgtgagagatcgaatacaacattgtttttatgaacac-agtttttaacatctttctcttcctctat |
12755355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 12743649 - 12743617
Alignment:
| Q |
61 |
ccatggctatagttcgatttgcatgtgtatgaa |
93 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
12743649 |
ccatggctatagttcgatttgcatgtgtgtgaa |
12743617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 12755114 - 12755146
Alignment:
| Q |
61 |
ccatggctatagttcgatttgcatgtgtatgaa |
93 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
12755114 |
ccatggctatagttcgatttgcatgtgtgtgaa |
12755146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University