View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_5 (Length: 568)
Name: NF1399_low_5
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 66 - 568
Target Start/End: Complemental strand, 15115764 - 15115261
Alignment:
| Q |
66 |
ttttctcatgcaaatacatcaaacttgacaccttttttaccttatggagttaaaggtgtatttcaagcatctgcaattctatattttgcatatggagggt |
165 |
Q |
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| T |
15115764 |
ttttctcatgcaaatacatcaaacttgacaccttttttaccttatggagttaaaggtgtatttcaagcatctgcaattctatattttgcatatggagggt |
15115665 |
T |
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| Q |
166 |
ttgacagtcttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttgattggttcaatgtctgtgatcacagttatctattg |
265 |
Q |
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| T |
15115664 |
ttgacagtcttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttgattggttcaatgtctgtgatcacagttatctattg |
15115565 |
T |
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| Q |
266 |
cttgatggcactttcactaagcatgatgcagaaatacacagatatagatacaggtgcagctttctcagttgcatttcagaaagttggaatgaattgggca |
365 |
Q |
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| T |
15115564 |
cttgatggcactttcactaagcatgatgcagaaatacacagatatagatacaggtgcagctttctcagttgcatttcagaaagttggaatgaattgggca |
15115465 |
T |
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| Q |
366 |
aaatatgtagtagcttttggtgcattgaaaggtatgacaacagtgcttttagtaggaagattaggacaagcgcgttatattgctcacatcgcacgttcgc |
465 |
Q |
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| T |
15115464 |
aaatatgtagtagcttttggtgcattgaaaggtatgacaacagtgcttttagtaggaagattaggacaagcgcgttatattgctcacatcgcacgttcgc |
15115365 |
T |
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| Q |
466 |
acatgattcctccttggttcgctcttgtacatccgaaaactggaacgcctat-gatactacacttctgattacaatttcaagtgcttgcatagccttttt |
564 |
Q |
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| T |
15115364 |
acatgattcctccttggttcgctcttgtacatccgaaaactggaacgcctataaatgctacacttctgattacaatttcaagtgcttgcatagccttttt |
15115265 |
T |
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| Q |
565 |
cact |
568 |
Q |
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| T |
15115264 |
cact |
15115261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 21597381 - 21597281
Alignment:
| Q |
175 |
ttgcaaccatggctgaagaaactaaaaatccgccaaaggacataccaataggcttgattggttcaatgtctgtgatcacagttatctattgcttgatggc |
274 |
Q |
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||||||| |||||||||||||||||||| || | | || ||||| || || || ||||||||||||||| ||||||| ||||| ||||| |||||||| |
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| T |
21597381 |
ttgcaactatggctgaagaaactaaaaacccttctagagatatacctattggtttaattggttcaatgtctatgatcacggttatttattgtttgatggc |
21597282 |
T |
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| Q |
275 |
a |
275 |
Q |
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| T |
21597281 |
a |
21597281 |
T |
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