View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_52 (Length: 280)
Name: NF1399_low_52
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 46565472 - 46565725
Alignment:
| Q |
1 |
agtgtacactaaatgtgaacatcttgggtggagtctatattcgaaaattaattagtttgccataaatataatagactggtcccatcaa-ctattctagta |
99 |
Q |
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| T |
46565472 |
agtgtacactaaatgtgaacatcttaggtggagtctatattcgaaaattaattagtttgccataa------tagactggtcccatcaaactattctagta |
46565565 |
T |
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| Q |
100 |
tatattttttcttgacacaaaatatactagtatcttgtatagagttagtgggataaaacatgaataatttactaactagtgacaatgtcattttctatta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46565566 |
tatattttttcttgacacaaaatatactagtatcttgtatagagttagtgggataaaacatgaataatttactaactagtgacagtgtcattttctatta |
46565665 |
T |
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| Q |
200 |
attagtggctagctagtgggaaattaatcaaaataacaatgatgatgatgatgcataata |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46565666 |
attagtggctagctagtgggaaattaaacaaaataacaatgatgatgatgatgcataata |
46565725 |
T |
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