View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_57 (Length: 270)
Name: NF1399_low_57
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 26832995 - 26832755
Alignment:
| Q |
1 |
tatcattgacgctaacattggagacgaaaatcattttttccatctataattcaagctttttaaggagtgttaataattattaatagcaagtcaatggact |
100 |
Q |
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| T |
26832995 |
tatcattgacgctaacattggagacgaaaatcattttttccatctctaattcaagctttttaaggagtgttaataattattaatagcaagtcaatggact |
26832896 |
T |
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| Q |
101 |
aatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgtagat |
200 |
Q |
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| T |
26832895 |
aatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgtagat |
26832796 |
T |
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| Q |
201 |
ggagaagcaaaggtgtgaatataaagtatgaagttagggac |
241 |
Q |
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| T |
26832795 |
ggagaagcaaaggtgtgaatataaagtatgaagttagggac |
26832755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 26786178 - 26786037
Alignment:
| Q |
97 |
gactaatgatagggttaagtttgtattaaaaggtgattgtgaatgattgtggcaaatgaacaaacaaaaaatgcaggagttggtacaagtagaatgccgt |
196 |
Q |
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| T |
26786178 |
gactaatgat-gggataaatttgtattaaa-ggtgattgtgaatgattgtggcaagtgaacaaa-aaaaattgcaggagttggtacaggaagaatgccgt |
26786082 |
T |
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| Q |
197 |
agatggagaagcaaaggtgtgaatataaagtatgaagttagggac |
241 |
Q |
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| T |
26786081 |
agatggcgaaacaaaggtgtgaacataaagtatgaagttagggac |
26786037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 26791856 - 26791777
Alignment:
| Q |
162 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggac |
241 |
Q |
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| T |
26791856 |
aaaaaatgcaggagtttgtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggac |
26791777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 26822749 - 26822678
Alignment:
| Q |
170 |
caggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggac |
241 |
Q |
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| T |
26822749 |
caggaattggtacaggaagaatgccgtagatggcgaaacaaaggtgtgaacataaagtatgaagttagggac |
26822678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 41917396 - 41917475
Alignment:
| Q |
162 |
aaaaaatgcaggagttggtacaagtagaatgccgtagatggagaagcaaaggtgtgaatataaagtatgaagttagggac |
241 |
Q |
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| T |
41917396 |
aaaaaatgtaggagttggtgcaactagaatgccaaagatgggcaagcaaaggagtgaatataaagtatgaagttagggac |
41917475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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