View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_62 (Length: 255)
Name: NF1399_low_62
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 8636866 - 8636647
Alignment:
| Q |
18 |
cattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttac |
117 |
Q |
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| T |
8636866 |
cattttgcaatttcaaggatcactttggattactattaatgtatgagattatgttgataca----gttctacaatttcagggaccaaattgattatttat |
8636771 |
T |
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| Q |
118 |
cccaaaaattaaaccaaacagacaattcatcaaacatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaa |
217 |
Q |
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| T |
8636770 |
cc-aaaaattaaaccaaacagacaattcatcaaacatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaa |
8636672 |
T |
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| Q |
218 |
acccaccaccaatgttttccatatt |
242 |
Q |
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| T |
8636671 |
acccaccaccaaagttttccatatt |
8636647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
| Q |
86 |
ctacaatttcagggaccaaattgattatttaccccaaaa |
124 |
Q |
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| T |
3115005 |
ctacaatttcagggaccaaattgagtatttaccccaaaa |
3114967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 7424289 - 7424202
Alignment:
| Q |
17 |
acattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattg |
108 |
Q |
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|||||||||||||||| |||||| |||| |||||| ||||||| |||| || |||| ||||||| ||||||||| ||||| ||||||| |
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| T |
7424289 |
acattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttg----atacagtcctacaattttagggatcaaattg |
7424202 |
T |
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