View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_64 (Length: 251)
Name: NF1399_low_64
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 26785834 - 26786074
Alignment:
| Q |
5 |
agggaaaaagagaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggtt |
104 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785834 |
agggaaaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggtt |
26785933 |
T |
|
| Q |
105 |
caggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785934 |
caggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttct |
26786033 |
T |
|
| Q |
205 |
gttgtccctaacttcatactttatgttcacacctttgtttc |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26786034 |
gttgtccctaacttcatactttatgttcacacctttgtttc |
26786074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 26822481 - 26822715
Alignment:
| Q |
11 |
aaagagaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggtt |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||| || ||||||||||||| |
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| T |
26822481 |
aaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggtt |
26822580 |
T |
|
| Q |
111 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822581 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
26822680 |
T |
|
| Q |
211 |
cctaacttcatactttatgttcacacctttgtttc |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
26822681 |
cctaacttcatactttatgttcacacctttgtttc |
26822715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 26791590 - 26791814
Alignment:
| Q |
21 |
taccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagc |
120 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||||||||||| |
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| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
121 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
221 |
tactttatgttcacacctttgtttc |
245 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
26791790 |
tactttatgttcacacctttgtttc |
26791814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 26832563 - 26832793
Alignment:
| Q |
16 |
gaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||| |
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| T |
26832563 |
gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa |
26832662 |
T |
|
| Q |
116 |
tcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaa |
215 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
26832663 |
tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa |
26832762 |
T |
|
| Q |
216 |
cttcatactttatgttcacacctttgtttct |
246 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |
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| T |
26832763 |
cttcatactttatattcacacctttgcttct |
26832793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 41546355 - 41546228
Alignment:
| Q |
104 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
41546355 |
tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
41546256 |
T |
|
| Q |
204 |
tgttgtccctaacttcatactttatgtt |
231 |
Q |
| |
|
| || ||||| | |||||||||||||| |
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| T |
41546255 |
tattttcccttatctcatactttatgtt |
41546228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 41917588 - 41917442
Alignment:
| Q |
95 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
194 |
Q |
| |
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|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
41917588 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
41917489 |
T |
|
| Q |
195 |
acccatttctgttgtccctaacttcatactttatgttcacacctttg |
241 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
41917488 |
atccatttctattgtccctaacttcatactttatattcactcctttg |
41917442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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