View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_67 (Length: 251)
Name: NF1399_low_67
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 16471797 - 16472037
Alignment:
| Q |
1 |
cagtatttgacttttttcttgcttcaccagtgccaaactaattgatattatatagcatatgaaattctgggggagatttgatatgtctataggaccagga |
100 |
Q |
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| T |
16471797 |
cagtatttgacttttttcttgcttcaccagtgccaaactaattgatattatatagcatatgaaattctgggggagatttgatatgtctataggaccagga |
16471896 |
T |
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| Q |
101 |
tccatgcaatccgagtgtactcttattcattgaaaatattcaattgacttcaatttgaggagatggttgattttttgtgtgttaagcttcacctttcagg |
200 |
Q |
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| T |
16471897 |
tccatgcaatccgagtgtactcttattcattgaaaatattcaattgacttcaatttgacgagatggttgattttttgtgtgttaagcttcacctttcagg |
16471996 |
T |
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| Q |
201 |
atatttgataattcgaagttagaatcgtaagataagtataat |
242 |
Q |
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| T |
16471997 |
agatttgataattcgaagtt-gaatcgtaagataagtgtaat |
16472037 |
T |
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