View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_68 (Length: 250)
Name: NF1399_low_68
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 51 - 241
Target Start/End: Complemental strand, 40991587 - 40991397
Alignment:
| Q |
51 |
attgattaaagtgacactaatagtcattttacaaccgtctcggatgaaatttgacctttgacctctgacctttgaagttataaggtcaaattaaccgtct |
150 |
Q |
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| T |
40991587 |
attgattaaagtgacactaatagtcattttacaaccgtctctgatgaaatttgacctttgacctctgacctttgaagttataaggtcaaattaaccgtct |
40991488 |
T |
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| Q |
151 |
catggacatggatttgttcatttgcttataagtacttaacgaactctgatacatgtgcctcagagagttagtttattttcattagtattat |
241 |
Q |
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| T |
40991487 |
catggacatggatttgttcatttgcttataagtacttaacgaactctgatacatgtgcctcagagagttagtttattttcattagtattat |
40991397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 16981766 - 16981733
Alignment:
| Q |
58 |
aaagtgacactaatagtcattttacaaccgtctc |
91 |
Q |
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| T |
16981766 |
aaagtgacactaatagtcattttacaacggtctc |
16981733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 30354733 - 30354701
Alignment:
| Q |
56 |
ttaaagtgacactaatagtcattttacaaccgt |
88 |
Q |
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| T |
30354733 |
ttaaagtgacactaatggtcattttacaaccgt |
30354701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 30639346 - 30639378
Alignment:
| Q |
57 |
taaagtgacactaatagtcattttacaaccgtc |
89 |
Q |
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| T |
30639346 |
taaagtgacacaaatagtcattttacaaccgtc |
30639378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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