View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1399_low_79 (Length: 207)
Name: NF1399_low_79
Description: NF1399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1399_low_79 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 8636833 - 8636647
Alignment:
| Q |
4 |
tattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttaccccaaaaattaaaccaaacagacaattcatcaa |
103 |
Q |
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| T |
8636833 |
tattaatgtatgagattatgttgataca----gttctacaatttcagggaccaaattgattatttatcc-aaaaattaaaccaaacagacaattcatcaa |
8636739 |
T |
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| Q |
104 |
acatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaacccaccaccaatgttttccatatt |
195 |
Q |
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| T |
8636738 |
acatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaacccaccaccaaagttttccatatt |
8636647 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
| Q |
39 |
ctacaatttcagggaccaaattgattatttaccccaaaa |
77 |
Q |
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| T |
3115005 |
ctacaatttcagggaccaaattgagtatttaccccaaaa |
3114967 |
T |
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