View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14000_low_1 (Length: 603)
Name: NF14000_low_1
Description: NF14000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14000_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 245 - 508
Target Start/End: Original strand, 11804930 - 11805193
Alignment:
| Q |
245 |
aaagagacttgaaaacaaggttgttgatgaatgaatcaggatgaccagatgagaaatctttaacaaaggtcaacatatttccaataagtggccatcccaa |
344 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||| || ||||||||||| |
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| T |
11804930 |
aaagagacttggaaacaaggttggtgatgaatgaatcaggatgaccagatgagaaatctttaacaaaagctaacatgttgccaatgagaggccatcccaa |
11805029 |
T |
|
| Q |
345 |
atgaccaggaggcagagggtgctgtttctttcttagtttcatattatagtaccactcattcaatctccacacaaaaatgttcacacaaaaatagcttgca |
444 |
Q |
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|||||||||||| ||||||| ||||| ||| | |||||||||||||| |||||||||||||||||||||| |||| || ||| ||||||||||||||| |
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| T |
11805030 |
atgaccaggaggtagagggtattgtttttttttgagtttcatattataataccactcattcaatctccacataaaattgatcaaacaaaaatagcttgcc |
11805129 |
T |
|
| Q |
445 |
aataaaatggcacacatccaaacccagtgttgtattttcatctttgaataattgaatctatcta |
508 |
Q |
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|| ||||||||||||||||||||||| | || ||||| |||||||||||||||| || |||||| |
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| T |
11805130 |
aacaaaatggcacacatccaaacccaatattctatttccatctttgaataattggatatatcta |
11805193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 217 - 385
Target Start/End: Original strand, 11818893 - 11819061
Alignment:
| Q |
217 |
aatgaagaattgcaatgggagaaaaataaaagagacttgaaaacaaggttgttgatgaatgaatcaggatgaccagatgagaaatctttaacaaaggtca |
316 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11818893 |
aatgaagaattgcaatcggagaaaaataaaagagacttggaaacaaggttgttgatgaatgaatcaggatggcctgatgagaaatctttaacaaaggtca |
11818992 |
T |
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| Q |
317 |
acatatttccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttca |
385 |
Q |
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| T |
11818993 |
acatatttccaataagtggccatcccaaatgaccaggaggcagagggtactgtttctttcttagtttca |
11819061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 220 - 494
Target Start/End: Original strand, 11820321 - 11820595
Alignment:
| Q |
220 |
gaagaattgcaatgggagaaaaataaaagagacttgaaaacaaggttgttgatgaatgaatcaggatgaccagatgagaaatctttaacaaaggtcaaca |
319 |
Q |
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|||||||| ||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
11820321 |
gaagaatttcaaggggagaaaaataaa-gagacctggaaacaaggtttttgatgaatgaatcaggatggcctgatgagaaatctttaacaaaggtcaaca |
11820419 |
T |
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| Q |
320 |
tatttccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttcatattatag-taccactcattcaatctccacacaa |
418 |
Q |
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|||| ||||||| ||||||||||| |||||||| |||| | ||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||| |
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| T |
11820420 |
tattgccaataaatggccatcccatatgaccagatggcaaaaggtattgattctttcttagtttcaaattatagttaccactcattcaacctccacacaa |
11820519 |
T |
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| Q |
419 |
aaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaata |
494 |
Q |
| |
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|||| || ||||||||||||||||| || |||||||||||||||| |||||| |||||| | |||||||||||| |
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| T |
11820520 |
aaatattaacacaaaaatagcttgccaacaaaatggcacacatccgaacccaaaattgtatatccatctttgaata |
11820595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 11818706 - 11818861
Alignment:
| Q |
18 |
cttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttggactcccgaataagtgtgtcttgtagatacctatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11818706 |
cttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttggactcccgaataaatgtgtcttgtagatacctatt |
11818805 |
T |
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| Q |
118 |
cgtccatacctaattaaaacaaaaggtagcgagtgagtatagataatataaacatatgct |
177 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
11818806 |
cgtccatacc----taaaacaaaagctagcgagtgagtatagaaactataaacatatgct |
11818861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 424 - 529
Target Start/End: Original strand, 11819058 - 11819167
Alignment:
| Q |
424 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaataattga----atctatctatctagttcatt |
519 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
11819058 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatctatctatctagttcatt |
11819157 |
T |
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| Q |
520 |
tgcttattat |
529 |
Q |
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|||||||||| |
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| T |
11819158 |
tgcttattat |
11819167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 11804749 - 11804863
Alignment:
| Q |
52 |
cacatgtcagcctcacaaacgatgatgcttggactcccgaataagtgtgtcttgtagatacctattcgtccatacctaattaaaacaaaaggtagcgagt |
151 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||| ||||| |||| || ||||| |
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| T |
11804749 |
cacatgtcagcctcacaaatgatgatgcttggactcccgaataagtgcgtcttgtagataccagtccgtccattccta---aaaaccaaagataacgagt |
11804845 |
T |
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| Q |
152 |
gagtatagataatataaa |
169 |
Q |
| |
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||||||||| |||||||| |
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| T |
11804846 |
gagtatagaaaatataaa |
11804863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 11805250 - 11805316
Alignment:
| Q |
530 |
tatatctagttcatttgcttgttgcatttatctccccctagatgttgtgtcagagttggtgatgatg |
596 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
11805250 |
tatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatg |
11805316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 11827014 - 11827126
Alignment:
| Q |
18 |
cttaaaggtctcatcatttgtcaacacttgcctacacatgtcagcctcacaaacgatgatgcttggactcccgaataagtgtgtcttgtagatacctatt |
117 |
Q |
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|||||| |||||||||||||| | | |||||||||||| |||| ||||| | |||||||||||||||||| || ||||| | |||||||||||| || |
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| T |
11827014 |
cttaaaagtctcatcatttgttaggatttgcctacacatatcagaatcacagatgatgatgcttggactcccaaacaagtgcgacttgtagataccagtt |
11827113 |
T |
|
| Q |
118 |
cgtccatacctaa |
130 |
Q |
| |
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| ||||||||||| |
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| T |
11827114 |
cttccatacctaa |
11827126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 550 - 596
Target Start/End: Original strand, 11819219 - 11819265
Alignment:
| Q |
550 |
gttgcatttatctccccctagatgttgtgtcagagttggtgatgatg |
596 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
11819219 |
gttgcatttatcttcccctagattttgtgtcagagttggtgaggatg |
11819265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 11827779 - 11827839
Alignment:
| Q |
220 |
gaagaattgcaatgggagaaaaataaaagagacttgaaaacaaggttgttgatgaatgaatc |
281 |
Q |
| |
|
|||||||| ||| |||||||||| ||| ||||| || ||| ||||||||||||||||||||| |
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| T |
11827779 |
gaagaatttcaaggggagaaaaagaaa-gagacctggaaataaggttgttgatgaatgaatc |
11827839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 245 - 398
Target Start/End: Complemental strand, 37431534 - 37431381
Alignment:
| Q |
245 |
aaagagacttgaaaacaaggttgttgatgaatgaatcaggatgaccagatgagaaatctttaacaaaggtcaacatatttccaataagtggccatcccaa |
344 |
Q |
| |
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||||| |||||| || ||||||| || ||||||||||||| || ||||||||||| | ||| ||| | || | || ||||||||||||||||||| |
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| T |
37431534 |
aaagatacttgagaataaggttggtggtgaatgaatcaggttggccagatgagaagtttttgttaaatgataataggttgccaataagtggccatcccat |
37431435 |
T |
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| Q |
345 |
atgaccaggaggcagagggtgctgtttctttcttagtttcatattatagtacca |
398 |
Q |
| |
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|| ||| ||||||| ||||| || ||| ||||||| ||| | || ||||||||| |
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|
| T |
37431434 |
atcacctggaggcaaagggtactctttgtttcttaatttgagatgatagtacca |
37431381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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