View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14000_low_3 (Length: 405)
Name: NF14000_low_3
Description: NF14000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14000_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 25498210 - 25498609
Alignment:
| Q |
1 |
caacactttcattggagaggacttataacaaacaccatgcctcttaaccttaacctcagaggcattgctaagaaaaccaagtgagttagttgcaacaata |
100 |
Q |
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| T |
25498210 |
caacactttcattggagaggacttggaacaaacaccattcctcttaaccttaacctcagaagcattgctaagaaaaccaagtgagttagttgcaacaata |
25498309 |
T |
|
| Q |
101 |
tcttcaggtgttccaacacaagcatgtcttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaacaaaaacaa |
200 |
Q |
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| T |
25498310 |
tcttcaggtgttccaacacaagcatgtcttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaacaaaaacaa |
25498409 |
T |
|
| Q |
201 |
actggcctaactgaatcttgtcactaaggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaaccttaacataaaa |
300 |
Q |
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| T |
25498410 |
actggcctaactgaatcttgtcacttaggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaaccttaacataaaa |
25498509 |
T |
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| Q |
301 |
gccttgatttgtaaacaaatctccacctgctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccaccaacttttatgtctgtg |
400 |
Q |
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| T |
25498510 |
gccttgatttgtaaacaaatctccacctgctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccaccaacttttatgtctgtg |
25498609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 92 - 384
Target Start/End: Original strand, 42468732 - 42469027
Alignment:
| Q |
92 |
gcaacaatatcttcaggtgttccaacacaagcatgtcttccaggaacaggcctaacaccacgaagaatcggaacaggcgaagcagcttcgaaccgatcaa |
191 |
Q |
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||||||||||| |||||||| |||||||||| |||||| ||||||||||| ||||||| | || | |||||||| |||| |||||| || ||||||| |
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| T |
42468732 |
gcaacaatatcctcaggtgtaccaacacaaggatgtctaccaggaacaggtttaacacccctaattacaggaacaggtgaagaagcttcaaaacgatcaa |
42468831 |
T |
|
| Q |
192 |
caaaaacaaactggcctaactgaatcttgtcactaaggattagatcatcatgttcatcagggagagagacataagtggcatgtgatgaatcagaaacctt |
291 |
Q |
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||||||||||||| || || ||||| || ||||| | || | |||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||| |
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| T |
42468832 |
caaaaacaaactgacccaattgaattttatcactcaaaatcaaatcatcatgttcatcaggtaaagaaacataagtagcatgagatgaatcagaaacctt |
42468931 |
T |
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| Q |
292 |
aacataaaagccttgatttgtaaacaaatctccacct---gctagtgctggaacaatgctcacaacttgtaacaatgatgatctatgttcaccacc |
384 |
Q |
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|| |||||| |||||||||| ||| | || |||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
42468932 |
aagataaaaaccttgatttggaaaaagttcgccacctgaagcaagtgctggaacaatgctaacaacttgtaacagtgatgatctgtgttcaccacc |
42469027 |
T |
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