View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14001_high_1 (Length: 320)

Name: NF14001_high_1
Description: NF14001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14001_high_1
NF14001_high_1
[»] chr3 (1 HSPs)
chr3 (19-311)||(52824111-52824403)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 52824111 - 52824403
Alignment:
Q  19 acacaccaagaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824111 acacaccaagaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactata 52824210  T
Q  119 tctgagtacttgataaacactatcccaggttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824211 tctgagtacttgataaacactatcccaggttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatc 52824310  T
Q  219 atatagtgcatgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgctcctc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52824311 atatagtgcatgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctc 52824403  T

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