View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14001_low_1 (Length: 385)
Name: NF14001_low_1
Description: NF14001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14001_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 37815027 - 37814666
Alignment:
| Q |
1 |
tcgtgcaacaatgaaacaaacattgaaaggaaaggccaagggcttcaacttcgttaacttcgctgtagttcgagcaacgtagctcgtgtaattatcatag |
100 |
Q |
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| T |
37815027 |
tcgtgcaacaatgaaacaaacattgaaaggaaaggccaagggcttcaacttcgttaacttcgttgtagttcgagcaacgtagctcgtgtaattatcatag |
37814928 |
T |
|
| Q |
101 |
ttgtcactcatgtattgcggcacagagcaattggtcccgaaaacactgtacctgaaatgtggagagtcccgaaaataccatacctgaaaaagtggagagt |
200 |
Q |
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| T |
37814927 |
ttgtcactcatgtattgcggcacagagcaattggtcccgaaaacaccgtacctgaaatatggagagtcccgaaaataccatacctgaaaaagtg--gagt |
37814830 |
T |
|
| Q |
201 |
ggtgtggtggccgttgtaagatggcttggaggagaagtcattctccttgtttctgttcaatttcaatcaaccaatatgatggcttgtggactcttgtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37814829 |
ggtgtggtggccgttgtaagatggcttggaggagaagtcattctccttgtttctgttcaatttcaatcaaccaatatgatggcttgtggactcttgtttc |
37814730 |
T |
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| Q |
301 |
ttagattcacacagattaaatccatcgctggatagagtttaggtctttgaggagagagagccca |
364 |
Q |
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| T |
37814729 |
ttagattcacacagattaaatccatcgccggatagagtttagatctttgaggagagagagccca |
37814666 |
T |
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