View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14001_low_3 (Length: 248)
Name: NF14001_low_3
Description: NF14001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14001_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 39123360 - 39123582
Alignment:
| Q |
12 |
aacctgtgtcttgcttgtcaatgcccaatcacgttgatagtaagtagtaacagtcatagggagagtagtagtgagacatggccatcattttattcaattt |
111 |
Q |
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| T |
39123360 |
aacctgtgtcttgcttgtcaatgcccaatcacgttgatagtaagtagtaacagtcatagggagagtagtagtgagacatggccatcattttattcaattt |
39123459 |
T |
|
| Q |
112 |
gacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgctactcatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39123460 |
gacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgctactcatt |
39123559 |
T |
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| Q |
212 |
ttaaggcgtgtaactctgtgttc |
234 |
Q |
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||||||||||||||||||||||| |
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| T |
39123560 |
ttaaggcgtgtaactctgtgttc |
39123582 |
T |
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