View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14001_low_4 (Length: 247)
Name: NF14001_low_4
Description: NF14001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14001_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 52824616 - 52824374
Alignment:
| Q |
7 |
aagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgatatatatata--ataagatgtgaca |
104 |
Q |
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| T |
52824616 |
aagaagagtgctagagagaaaatcagatgttgaatgaatgtatgaaatctaaagatatgtctatatcattgttgatatatatatataataagatgtgaca |
52824517 |
T |
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| Q |
105 |
atgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcagaataa |
204 |
Q |
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| T |
52824516 |
atgttaattgggagggattgttatctgtggaactgtgaaatcccccaaactgctgctgaaattgacggtgtttgatctgttatccattttttcagaataa |
52824417 |
T |
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| Q |
205 |
tacagtggtgcttgaggaacacagatcctacgcatgctctcgc |
247 |
Q |
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| T |
52824416 |
tacagtggtgcttgaggaacacagatcctacgcatgctctcgc |
52824374 |
T |
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