View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14002_high_12 (Length: 226)
Name: NF14002_high_12
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 8141787 - 8141896
Alignment:
| Q |
101 |
acctttaaatgcatttgaccaataatatagtacctaaaacctatcttggtagaatcagaagcagagtttgaggacattgattccgatggttcaattgaag |
200 |
Q |
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| T |
8141787 |
acctttagatgcatttgaccaataatatagtaccaaaaatctatcttggtggaatcagaagcagagtttgaggacattgattccgatgattcaattgaag |
8141886 |
T |
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| Q |
201 |
aagttgaagg |
210 |
Q |
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| T |
8141887 |
aagttgaagg |
8141896 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 9130594 - 9130657
Alignment:
| Q |
144 |
tcttggtagaatcagaagcagagtttgaggacattgattccgatggttcaattgaagaagttga |
207 |
Q |
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| T |
9130594 |
tcttggtagaatcagaagcagagtttaaggaaattgattcagacaattcaattgaagaagttga |
9130657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 22210273 - 22210207
Alignment:
| Q |
144 |
tcttggtagaatcagaagcagagtttgaggacattgattccgatggttcaattgaagaagttgaagg |
210 |
Q |
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|||| |||||||| |||| |||||||||||| ||||||| |||| |||||| |||||||||||||| |
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| T |
22210273 |
tcttagtagaatcggaagtagagtttgaggatattgatttagatgattcaatagaagaagttgaagg |
22210207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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