View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14002_high_4 (Length: 468)
Name: NF14002_high_4
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 48342568 - 48342274
Alignment:
| Q |
21 |
tatagttattattttgaaaatggtgttaaaaaggcatacctggaatcttttatggtagtttgaaatcttgatgaacatgatctcttacccccaaatagtt |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48342568 |
tatagttattgttttgaaaatggtgttaaaaaggcatacctggaatcttttatggtagtttgaaatcttgatgaacatgatctcttacccccaaatagtt |
48342469 |
T |
|
| Q |
121 |
tgggctcatgtttctctcttttcttggtttgtaattttgatatgcattttttatttactgcaacatgatctgttatgatatgctcattctcctcatgcca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48342468 |
tgggctcatgtttctctcttttcttggtttgtaattttgatatgcattttttatttactgcaacatgatctgttatgatatgctcattctcctcatgcca |
48342369 |
T |
|
| Q |
221 |
atcatcttcgtttgaaaggtaatctaaagaaagaattacaagcaacatgtttaggtcaacaagagatgtgtttgacatatgtgaatgagacaatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48342368 |
atcatcttcgtttgaaaggtaatctaaagaaagaattacaagcaacatgtttaggtcaacaagagatgtgtttgacacatgtgaatgagacaatg |
48342274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 48342208 - 48342135
Alignment:
| Q |
381 |
gtttcttccatattttgaaggaaaaagtcagtctcataagatcaaaacttaattttgattataatctccttatt |
454 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48342208 |
gtttcttccatattttgaatgaaaaagtcagtctcataagatcaaaacttaattttgattataatatccttatt |
48342135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 2242138 - 2242067
Alignment:
| Q |
79 |
tttgaaatcttgatgaacatgatctcttacccccaaatagtttgggctcatgtttctctcttttcttggtttg |
151 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2242138 |
tttgaaatcttgatgaacatgatctctttcccc-aaatagtttgggctcatgttgatctcttttcttggtttg |
2242067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University