View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14002_high_8 (Length: 288)

Name: NF14002_high_8
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14002_high_8
NF14002_high_8
[»] chr1 (9 HSPs)
chr1 (65-265)||(8016214-8016417)
chr1 (127-184)||(46252676-46252733)
chr1 (125-162)||(1565551-1565588)
chr1 (147-184)||(3223706-3223743)
chr1 (129-182)||(5886990-5887043)
chr1 (45-74)||(8016160-8016189)
chr1 (127-184)||(10809364-10809421)
chr1 (116-173)||(38503470-38503527)
chr1 (145-181)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (127-184)||(3528822-3528879)
chr6 (135-184)||(281842-281891)
chr6 (147-188)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (128-184)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (127-181)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (127-173)||(35379021-35379067)
chr2 (127-181)||(44443340-44443394)
chr2 (127-184)||(43199778-43199835)
chr2 (127-187)||(43910990-43911050)
[»] chr8 (1 HSPs)
chr8 (127-184)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (217-250)||(1288764-1288797)
chr3 (127-179)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (214-246)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 65 - 265
Target Start/End: Original strand, 8016214 - 8016417
Alignment:
Q  65 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagctcaggaaaataagctgaaaacaag 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8016214 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagcttaggaaaataagctgaaaacaag 8016313  T
Q  165 ttataaacatttcataagttctcctggccagtctcataaatattcgagacaat---tgataagctcaaataagtcaatcaaaacaaactaacctcggatg 261  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||| |||||||   |||||| ||||||||||||||||||||||||||||||||||| |    
T  8016314 ttatgaacatgtcataagttctcccggacagtctcataaatattcaagacaattgatgataatctcaaataagtcaatcaaaacaaactaacctcggacg 8016413  T
Q  262 tagc 265  Q
    ||||    
T  8016414 tagc 8016417  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 46252733 - 46252676
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||||||| | |||||||| |||||||||| |||| ||||| |||||||||    
T  46252733 ctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagtt 46252676  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 1565588 - 1565551
Alignment:
Q  125 atctatcttggagagctcaggaaaataagctgaaaaca 162  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  1565588 atctattttggagagctcatgaaaataagctgaaaaca 1565551  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 3223706 - 3223743
Alignment:
Q  147 aaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  3223706 aaataagctgaaaacaacttataaacatgtcataagtt 3223743  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 5887043 - 5886990
Alignment:
Q  129 atcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataag 182  Q
    |||||||||| || | ||||||||||||||||||| |||| ||||| |||||||    
T  5887043 atcttggagaacttacgaaaataagctgaaaacaacttatgaacatgtcataag 5886990  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 8016160 - 8016189
Alignment:
Q  45 catcaaagctttaacatgcaaagccatttt 74  Q
    ||||||||||||||||||||||||||||||    
T  8016160 catcaaagctttaacatgcaaagccatttt 8016189  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 10809364 - 10809421
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    |||| ||||||| || | ||||||||||||||||||  |||||||||| |||||||||    
T  10809364 ctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagtt 10809421  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 38503527 - 38503470
Alignment:
Q  116 gtttctgttatctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 173  Q
    |||| ||||| |||||||||||| || | ||||||||||||||||||| |||| ||||    
T  38503527 gtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 29635384 - 29635420
Alignment:
Q  145 gaaaataagctgaaaacaagttataaacatttcataa 181  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  29635384 gaaaataagctgaaaacaacttataaacatgtcataa 29635420  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 3528822 - 3528879
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||||||| | ||||||||| ||||||||||||||  |||| |||||||||    
T  3528822 ctatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagtt 3528879  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 281891 - 281842
Alignment:
Q  135 gagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  281891 gagagctcatggaaataagctgaaaacaacttatagacatgtcataagtt 281842  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 6536986 - 6537027
Alignment:
Q  147 aaataagctgaaaacaagttataaacatttcataagttctcc 188  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6536986 aaataagctgaaaacaacttatgaacatgtcataagttctcc 6537027  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 25670636 - 25670580
Alignment:
Q  128 tatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||||||   ||||||||||||||||||| |||| ||||| |||||||||    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagtt 25670580  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 11707074 - 11707128
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 181  Q
    |||||||| ||||||   ||||||||||||||||||| |||||||||| ||||||    
T  11707074 ctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 35379067 - 35379021
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 173  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 44443340 - 44443394
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 181  Q
    ||||||| ||||||  | ||||||||||||||||||| |||| ||||||||||||    
T  44443340 ctatctttgagagcatatgaaaataagctgaaaacaacttatgaacatttcataa 44443394  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 43199835 - 43199778
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||| ||| | |||| |||||||||||||| |||||||||| ||| |||||    
T  43199835 ctatcttggagggcttatgaaattaagctgaaaacaacttataaacatgtcacaagtt 43199778  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 43911050 - 43910990
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagttctc 187  Q
    |||||||||| ||||   || |||||||||||||||| |||| ||||| ||||||||||||    
T  43911050 ctatcttggaaagcttgtgataataagctgaaaacaacttatgaacatgtcataagttctc 43910990  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 7714261 - 7714318
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 184  Q
    ||||||||||||||||| ||||||||| ||||||||  | ||  ||||||||||||||    
T  7714261 ctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagtt 7714318  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 1288797 - 1288764
Alignment:
Q  217 ttgataagctcaaataagtcaatcaaaacaaact 250  Q
    |||||||||||||||||||||||| |||||||||    
T  1288797 ttgataagctcaaataagtcaatccaaacaaact 1288764  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 41633379 - 41633431
Alignment:
Q  127 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcat 179  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| |||| ||||    
T  41633379 ctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat 41633431  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 38336848 - 38336816
Alignment:
Q  214 caattgataagctcaaataagtcaatcaaaaca 246  Q
    |||| ||||||||||||||||||||||||||||    
T  38336848 caatggataagctcaaataagtcaatcaaaaca 38336816  T

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