View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14002_high_9 (Length: 258)

Name: NF14002_high_9
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14002_high_9
NF14002_high_9
[»] chr2 (3 HSPs)
chr2 (7-233)||(33196983-33197209)
chr2 (198-231)||(21279962-21279995)
chr2 (204-236)||(7103392-7103424)
[»] chr7 (3 HSPs)
chr7 (198-236)||(20526565-20526603)
chr7 (196-236)||(19624296-19624336)
chr7 (198-231)||(11782956-11782989)
[»] chr4 (7 HSPs)
chr4 (196-231)||(7367965-7368000)
chr4 (196-230)||(54575514-54575548)
chr4 (203-231)||(37575854-37575882)
chr4 (203-231)||(41336884-41336912)
chr4 (195-231)||(46175583-46175619)
chr4 (203-231)||(52169938-52169966)
chr4 (203-231)||(52428788-52428816)
[»] chr3 (6 HSPs)
chr3 (196-231)||(31615471-31615506)
chr3 (196-231)||(43875590-43875625)
chr3 (196-231)||(47903991-47904026)
chr3 (201-230)||(20874227-20874256)
chr3 (201-233)||(1288765-1288797)
chr3 (197-225)||(34637897-34637925)
[»] chr8 (2 HSPs)
chr8 (196-230)||(1074179-1074213)
chr8 (199-231)||(10727468-10727500)
[»] chr6 (5 HSPs)
chr6 (197-231)||(9911795-9911829)
chr6 (198-231)||(837129-837162)
chr6 (194-231)||(4308901-4308938)
chr6 (200-236)||(1498090-1498126)
chr6 (195-231)||(29270024-29270060)
[»] chr1 (6 HSPs)
chr1 (201-257)||(8016342-8016401)
chr1 (194-231)||(30013988-30014025)
chr1 (203-231)||(172491-172519)
chr1 (205-233)||(24334317-24334345)
chr1 (203-231)||(29045851-29045879)
chr1 (204-236)||(37617384-37617416)
[»] scaffold0459 (1 HSPs)
scaffold0459 (198-230)||(6671-6703)
[»] scaffold0366 (1 HSPs)
scaffold0366 (198-230)||(6669-6701)
[»] scaffold0152 (2 HSPs)
scaffold0152 (196-228)||(4176-4208)
scaffold0152 (196-228)||(8424-8456)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 33196983 - 33197209
Alignment:
Q  7 tggacatcatcacatgtcggacaccaaatacactttcaatctaaagtgtcaatgctaaatacgattcaagttgtgttatattacagtcagtgggatggaa 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33196983 tggacatcaacacatgtcggacaccaaatacactttcaatctaaagtgtcaatgctaaatacgattcaagttgtgttatattacagtcagtgggatggaa 33197082  T
Q  107 tccaaactcaagtttctacttagatggaaacacagggcatggctcaagttgatttgattaattgatcagtcaagcacttcattttgattttagggtttgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33197083 tccaaactcaagtttctacttagatggaaacacagggcatggctcaagttgatttgattaattgatcagtcaagcacttcattttgattttagggtttgt 33197182  T
Q  207 ttggattgacttatttgagtttatcaa 233  Q
    |||||||||||||||||||||||||||    
T  33197183 ttggattgacttatttgagtttatcaa 33197209  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 21279962 - 21279995
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||| |||||||||||||||||||||    
T  21279962 agggtttgtttgaattgacttatttgagtttatc 21279995  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7103392 - 7103424
Alignment:
Q  204 tgtttggattgacttatttgagtttatcaattg 236  Q
    |||||||||||||||||||||||||||| ||||    
T  7103392 tgtttggattgacttatttgagtttatctattg 7103424  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 20526603 - 20526565
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttatcaattg 236  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  20526603 agggtttgtttggattgacttatttgagtttatctattg 20526565  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 19624336 - 19624296
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttatcaattg 236  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  19624336 ttagggtttgtttggcttgacttatttgagtttatctattg 19624296  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 11782956 - 11782989
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||| |||||    
T  11782956 agggtttgtttggattgacttatttgagattatc 11782989  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 7367965 - 7368000
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttatc 231  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7367965 ttagggtctgtttggattgacttatttgagtttatc 7368000  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 54575514 - 54575548
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttat 230  Q
    ||||||| |||||||||||||||||||||||||||    
T  54575514 ttagggtatgtttggattgacttatttgagtttat 54575548  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 37575854 - 37575882
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  37575854 ttgtttggattgacttatttgagtttatc 37575882  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 41336912 - 41336884
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  41336912 ttgtttggattgacttatttgagtttatc 41336884  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 46175583 - 46175619
Alignment:
Q  195 tttagggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  46175583 tttagggtatgtttggattgacttatttgagtatatc 46175619  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 52169938 - 52169966
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  52169938 ttgtttggattgacttatttgagtttatc 52169966  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 52428816 - 52428788
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  52428816 ttgtttggattgacttatttgagtttatc 52428788  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 31615471 - 31615506
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttatc 231  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31615471 ttagggtatgtttggattgacttatttgagtttatc 31615506  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 43875625 - 43875590
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||| |||||||||||||||||||||    
T  43875625 ttagggtttgtttgaattgacttatttgagtttatc 43875590  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Original strand, 47903991 - 47904026
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttatc 231  Q
    ||||||| ||||||||||||||||||||||||||||    
T  47903991 ttagggtctgtttggattgacttatttgagtttatc 47904026  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 20874227 - 20874256
Alignment:
Q  201 gtttgtttggattgacttatttgagtttat 230  Q
    ||||||||||||||||||||||||||||||    
T  20874227 gtttgtttggattgacttatttgagtttat 20874256  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 1288765 - 1288797
Alignment:
Q  201 gtttgtttggattgacttatttgagtttatcaa 233  Q
    ||||||||||||||||||||||||| |||||||    
T  1288765 gtttgtttggattgacttatttgagcttatcaa 1288797  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 34637897 - 34637925
Alignment:
Q  197 tagggtttgtttggattgacttatttgag 225  Q
    |||||||||||||||||||||||||||||    
T  34637897 tagggtttgtttggattgacttatttgag 34637925  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 1074179 - 1074213
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagtttat 230  Q
    |||||| ||||||||||||||||||||||||||||    
T  1074179 ttagggcttgtttggattgacttatttgagtttat 1074213  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 10727500 - 10727468
Alignment:
Q  199 gggtttgtttggattgacttatttgagtttatc 231  Q
    |||| ||||||||||||||||||||||||||||    
T  10727500 gggtctgtttggattgacttatttgagtttatc 10727468  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 9911795 - 9911829
Alignment:
Q  197 tagggtttgtttggattgacttatttgagtttatc 231  Q
    ||||||||||||||||||| |||||||||||||||    
T  9911795 tagggtttgtttggattgatttatttgagtttatc 9911829  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 837129 - 837162
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||| |||||||||    
T  837129 agggtttgtttggattgacttattagagtttatc 837162  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 4308938 - 4308901
Alignment:
Q  194 ttttagggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  4308938 ttttagggattgtttggattggcttatttgagtttatc 4308901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 1498126 - 1498090
Alignment:
Q  200 ggtttgtttggattgacttatttgagtttatcaattg 236  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  1498126 ggtttgtttcgattgacttatttgagtttatctattg 1498090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 29270060 - 29270024
Alignment:
Q  195 tttagggtttgtttggattgacttatttgagtttatc 231  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  29270060 tttagggtctgtttggattgacttatttgactttatc 29270024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 8016401 - 8016342
Alignment:
Q  201 gtttgtttggattgacttatttgagttt---atcaattgtctcgaatatttaagagactg 257  Q
    |||||||| |||||||||||||||| ||   ||||||||||| ||||||||| |||||||    
T  8016401 gtttgttttgattgacttatttgagattatcatcaattgtcttgaatatttatgagactg 8016342  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 30013988 - 30014025
Alignment:
Q  194 ttttagggtttgtttggattgacttatttgagtttatc 231  Q
    |||||| || ||||||||||||||||||||||||||||    
T  30013988 ttttagagtctgtttggattgacttatttgagtttatc 30014025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 172491 - 172519
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  172491 ttgtttggattgacttatttgagtttatc 172519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 24334345 - 24334317
Alignment:
Q  205 gtttggattgacttatttgagtttatcaa 233  Q
    |||||||||||||||||||||||||||||    
T  24334345 gtttggattgacttatttgagtttatcaa 24334317  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 29045851 - 29045879
Alignment:
Q  203 ttgtttggattgacttatttgagtttatc 231  Q
    |||||||||||||||||||||||||||||    
T  29045851 ttgtttggattgacttatttgagtttatc 29045879  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 37617384 - 37617416
Alignment:
Q  204 tgtttggattgacttatttgagtttatcaattg 236  Q
    |||||||||||||||||||||||||||| ||||    
T  37617384 tgtttggattgacttatttgagtttatctattg 37617416  T

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Target: scaffold0459 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 6703 - 6671
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttat 230  Q
    |||||||||||||||||||||||||||| ||||    
T  6703 agggtttgtttggattgacttatttgagcttat 6671  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 6701 - 6669
Alignment:
Q  198 agggtttgtttggattgacttatttgagtttat 230  Q
    |||||||||||||||||||||||||||| ||||    
T  6701 agggtttgtttggattgacttatttgagcttat 6669  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 4176 - 4208
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagttt 228  Q
    ||||| |||||||||||||||||||||||||||    
T  4176 ttaggatttgtttggattgacttatttgagttt 4208  T

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Target: scaffold0152; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 8424 - 8456
Alignment:
Q  196 ttagggtttgtttggattgacttatttgagttt 228  Q
    ||||| |||||||||||||||||||||||||||    
T  8424 ttaggatttgtttggattgacttatttgagttt 8456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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