View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14002_low_11 (Length: 237)
Name: NF14002_low_11
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 39372964 - 39373046
Alignment:
| Q |
138 |
ccgaattgactggcatcaattaatatcattggtttaattaagacaataggtttgagatttagggaggtttctttggcacgact |
220 |
Q |
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| T |
39372964 |
ccgaattgactggcatcaattaatatcattggtttaattaagacaataggtttgagatttagggaggtttctttggcacgact |
39373046 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 39372839 - 39372915
Alignment:
| Q |
15 |
cagagagaattgagatataataccaaggctaaagtatactttttat--tctctataatttacaaaatgtttgttatg |
89 |
Q |
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| T |
39372839 |
cagagagaattgagatataataccaaggctaaagtatactttttattctctctataatttacaaaatgtttgttatg |
39372915 |
T |
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