View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14002_low_13 (Length: 227)

Name: NF14002_low_13
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14002_low_13
NF14002_low_13
[»] chr1 (7 HSPs)
chr1 (4-211)||(7740913-7741120)
chr1 (149-196)||(15581519-15581566)
chr1 (149-186)||(48046405-48046442)
chr1 (151-211)||(50678249-50678314)
chr1 (149-211)||(42365839-42365896)
chr1 (70-134)||(46205370-46205434)
chr1 (151-184)||(34969739-34969772)
[»] chr3 (10 HSPs)
chr3 (149-211)||(27011134-27011196)
chr3 (149-200)||(32278316-32278367)
chr3 (152-199)||(44713184-44713231)
chr3 (149-186)||(25045315-25045352)
chr3 (149-186)||(39440004-39440041)
chr3 (149-186)||(2230242-2230279)
chr3 (70-134)||(52286126-52286190)
chr3 (150-189)||(23407925-23407964)
chr3 (149-186)||(42029429-42029466)
chr3 (150-186)||(23466643-23466679)
[»] chr4 (8 HSPs)
chr4 (23-145)||(18895213-18895337)
chr4 (150-211)||(3121182-3121243)
chr4 (152-211)||(35292001-35292060)
chr4 (152-203)||(48084633-48084684)
chr4 (155-211)||(50859126-50859182)
chr4 (149-200)||(35033947-35033998)
chr4 (149-196)||(41223791-41223838)
chr4 (157-200)||(13779289-13779332)
[»] chr7 (4 HSPs)
chr7 (149-211)||(36657717-36657779)
chr7 (151-200)||(19625367-19625416)
chr7 (149-211)||(23417330-23417387)
chr7 (70-134)||(25029729-25029793)
[»] chr2 (7 HSPs)
chr2 (149-196)||(10354208-10354255)
chr2 (149-186)||(6476769-6476806)
chr2 (150-200)||(28199344-28199393)
chr2 (151-186)||(18000080-18000115)
chr2 (151-186)||(44246301-44246336)
chr2 (149-186)||(7444821-7444858)
chr2 (149-186)||(28218966-28219003)
[»] scaffold0022 (2 HSPs)
scaffold0022 (149-186)||(44263-44300)
scaffold0022 (149-186)||(77984-78021)
[»] chr5 (4 HSPs)
chr5 (149-186)||(11617182-11617219)
chr5 (149-183)||(30084858-30084892)
chr5 (149-189)||(4943475-4943515)
chr5 (149-186)||(41483507-41483544)
[»] chr8 (4 HSPs)
chr8 (149-193)||(38679689-38679733)
chr8 (149-196)||(42025479-42025526)
chr8 (149-186)||(14112483-14112520)
chr8 (150-186)||(34924886-34924922)
[»] scaffold0110 (1 HSPs)
scaffold0110 (149-211)||(38682-38739)
[»] chr6 (1 HSPs)
chr6 (67-113)||(33870203-33870249)
[»] scaffold0039 (1 HSPs)
scaffold0039 (149-186)||(56864-56901)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 7740913 - 7741120
Alignment:
Q  4 tccctaccaatattggtgttttgggagagattgcagaaaatacaacatgcctcacacaattttgtggcatttgagaatatggtgaaaaagtggccacaat 103  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7740913 tccctactaatattggtgttttgggagagattgcacaaaatacaacatgcctcacacaattttgtggcatttgagaatatggtgaaaaagtggcgacaat 7741012  T
Q  104 tagaaattgaaaaggaattaaaaaatagccagagtgcacctcttcggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaacca 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7741013 tagaaattgaaaaggaattaaaaaatagctagagtgcacctcttcggctatgtttggattgatggagagtggtggaatggaatagagtgggatgtaacca 7741112  T
Q  204 tgttccat 211  Q
    ||||||||    
T  7741113 tgttccat 7741120  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 15581519 - 15581566
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggat 196  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  15581519 ggctatgtttggattgatggagagtgatggaatggaatggagtgggat 15581566  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 48046405 - 48046442
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48046405 ggctatgtttggattgatggagagtggtggaatggaat 48046442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 50678314 - 50678249
Alignment:
Q  151 ctatgtttggattgatggagagtggtggaatggaata-----gagtgggatggaaccatgttccat 211  Q
    |||||||||||||||||||||||| |||||||||||      ||||||||||||||||||||||||    
T  50678314 ctatgtttggattgatggagagtgatggaatggaatgaaattgagtgggatggaaccatgttccat 50678249  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 42365839 - 42365896
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    |||||||||||||||||||||||||| ||||||||||| ||     |||||||||||||||||    
T  42365839 ggctatgtttggattgatggagagtgatggaatggaatgga-----atggaaccatgttccat 42365896  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 46205370 - 46205434
Alignment:
Q  70 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 134  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  46205370 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 46205434  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 34969739 - 34969772
Alignment:
Q  151 ctatgtttggattgatggagagtggtggaatgga 184  Q
    |||||||||||||||||||||||| |||||||||    
T  34969739 ctatgtttggattgatggagagtgatggaatgga 34969772  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 27011134 - 27011196
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  27011134 ggctatgtttggattgatggagagtgatggaatggaatggagtgggatggaaccatgttccat 27011196  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 32278316 - 32278367
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaa 200  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  32278316 ggctatgtttggattgatggagagtggtggaatggaatggaatgggatggaa 32278367  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 44713184 - 44713231
Alignment:
Q  152 tatgtttggattgatggagagtggtggaatggaatagagtgggatgga 199  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  44713184 tatgtttggattgatggagagtggtggaatggaatggagagggatgga 44713231  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 25045315 - 25045352
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25045315 ggctatgtttggattgatggagagtggtggaatggaat 25045352  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 39440041 - 39440004
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39440041 ggctatgtttggattgatggagagtggtggaatggaat 39440004  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 2230279 - 2230242
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2230279 ggctatgcttggattgatggagagtggtggaatggaat 2230242  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 52286190 - 52286126
Alignment:
Q  70 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 134  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  52286190 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 52286126  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 23407925 - 23407964
Alignment:
Q  150 gctatgtttggattgatggagagtggtggaatggaataga 189  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  23407925 gctatgtttggattggtagagagtggtggaatggaataga 23407964  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 42029466 - 42029429
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  42029466 ggctatgtttggattggtggtgagtggtggaatggaat 42029429  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 23466643 - 23466679
Alignment:
Q  150 gctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||| | |||||||||||||||||||    
T  23466643 gctatgtttggattggtagagagtggtggaatggaat 23466679  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 18895337 - 18895213
Alignment:
Q  23 tttgggagagattgcagaaaatacaacatgcctcacacaatttt--gtggcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaa 120  Q
    ||||||||| ||||||| ||| |||||||| |||||||||||||  |||||||||||||| ||||||| || ||||| |||||||||  |||| || |||    
T  18895337 tttgggagatattgcaggaaaaacaacatgtctcacacaatttttagtggcatttgagaagatggtgagaaggtggcgacaattagaggttgagaacgaa 18895238  T
Q  121 ttaaaaaatagccagagtgcacctc 145  Q
    || |||||||| |||||||| ||||    
T  18895237 ttcaaaaatagtcagagtgcgcctc 18895213  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 3121182 - 3121243
Alignment:
Q  150 gctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  3121182 gctatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattccat 3121243  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 35292001 - 35292060
Alignment:
Q  152 tatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||| ||||||    
T  35292001 tatgtttggattgatggagagtggtggaatggaatggagtgggataaaaccatattccat 35292060  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 48084633 - 48084684
Alignment:
Q  152 tatgtttggattgatggagagtggtggaatggaatagagtgggatggaacca 203  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  48084633 tatgtttggattgatggagagtggtggaatggaatggagtgggatgaaacca 48084684  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 50859126 - 50859182
Alignment:
Q  155 gtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  50859126 gttttgattgatgaagagtggtggaatggaatggagtgggatggaagcatgttccat 50859182  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 35033998 - 35033947
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaa 200  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  35033998 ggctatgtttggattgatggagagtggtggaatggaatggaatgggttggaa 35033947  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 41223838 - 41223791
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggat 196  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  41223838 ggctatgtttggattgatggagagtgatggaatggaatggagtgggat 41223791  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 13779289 - 13779332
Alignment:
Q  157 ttggattgatggagagtggtggaatggaatagagtgggatggaa 200  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  13779289 ttggattgatggagagtggtggaatggaatggaatgggatggaa 13779332  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 36657779 - 36657717
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    |||||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  36657779 ggctatatttggattgatggagagtgatggaatggaatggggtgggatggaaccatgttccat 36657717  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 19625367 - 19625416
Alignment:
Q  151 ctatgtttggattgatggagagtggtggaatggaatagagtgggatggaa 200  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  19625367 ctatgtttggattgatggagagtggtggaatggaatggaatgggatggaa 19625416  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 23417387 - 23417330
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    ||||||||||||||||||||||||||     ||||||| ||||||||||||||||||||||||    
T  23417387 ggctatgtttggattgatggagagtg-----atggaatggagtgggatggaaccatgttccat 23417330  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 25029793 - 25029729
Alignment:
Q  70 gcatttgagaatatggtgaaaaagtggccacaattagaaattgaaaaggaattaaaaaatagcca 134  Q
    |||||||| || ||||| || ||||||| ||||||||| | |||||||||||| |||||||||||    
T  25029793 gcatttgaaaaaatggtaaacaagtggcgacaattagagactgaaaaggaattcaaaaatagcca 25029729  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 10354208 - 10354255
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggat 196  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10354208 ggctatgtttggattgatggagagtggtggaatggaatggagtaggat 10354255  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 6476769 - 6476806
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6476769 ggctatgtttggattgatggagagtggtggaatggaat 6476806  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 28199393 - 28199344
Alignment:
Q  150 gctatgtttggattgatggagagtggtggaatggaatagagtgggatggaa 200  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||    
T  28199393 gctatgtttggattgatg-agagtggtggaatggaatggaatgggatggaa 28199344  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 18000115 - 18000080
Alignment:
Q  151 ctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||||||||||| |||||||||||    
T  18000115 ctatgtttggattgatggagagtgatggaatggaat 18000080  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 44246301 - 44246336
Alignment:
Q  151 ctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||||||||||| |||||||||||    
T  44246301 ctatgtttggattgatggagagtgatggaatggaat 44246336  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 7444858 - 7444821
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  7444858 ggctttgtttggattgatggagagtgatggaatggaat 7444821  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 28218966 - 28219003
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  28218966 ggctatgtttggattggtggtgagtggtggaatggaat 28219003  T

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Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 44300 - 44263
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44300 ggctatgtttggattgatggagagtggtggaatggaat 44263  T

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Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 78021 - 77984
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  78021 ggctatgtttggattgatggagagtggtggaatggaat 77984  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 11617182 - 11617219
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11617182 ggctatgtttggattgatggagagtggtggaatggaat 11617219  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 30084858 - 30084892
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatgg 183  Q
    |||||||||||||||||||||||||||||||||||    
T  30084858 ggctatgtttggattgatggagagtggtggaatgg 30084892  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 4943475 - 4943515
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaataga 189  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  4943475 ggctatgtttggattggtggtgagtggtggaatggaataga 4943515  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 41483507 - 41483544
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||||||||  |||||||||||||||    
T  41483507 ggctatgtttggattgatggaatgtggtggaatggaat 41483544  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 38679689 - 38679733
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgg 193  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  38679689 ggctatgtttggattgatggagagtgatggaatggaatggagtgg 38679733  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 42025526 - 42025479
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggat 196  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  42025526 ggctttgtttggattgatggagagtgatggaatggaatggagtgggat 42025479  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 14112520 - 14112483
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||||||||||||| |||||||||||    
T  14112520 ggctatgtttggattgatggagagtgatggaatggaat 14112483  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 34924922 - 34924886
Alignment:
Q  150 gctatgtttggattgatggagagtggtggaatggaat 186  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34924922 gctatgtttggattgatggagagtgatggaatggaat 34924886  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 38739 - 38682
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaatagagtgggatggaaccatgttccat 211  Q
    |||||||||| ||||||||||||||| |||||||||     ||||||||||||||||||||||    
T  38739 ggctatgttttgattgatggagagtgatggaatgga-----gtgggatggaaccatgttccat 38682  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 33870203 - 33870249
Alignment:
Q  67 gtggcatttgagaatatggtgaaaaagtggccacaattagaaattga 113  Q
    |||||||||||||| |||||||||||||||| |||||||||| ||||    
T  33870203 gtggcatttgagaaaatggtgaaaaagtggcgacaattagaagttga 33870249  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 56864 - 56901
Alignment:
Q  149 ggctatgtttggattgatggagagtggtggaatggaat 186  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  56864 ggctatgtttggattgatggagagtgatggaagggaat 56901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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