View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14002_low_15 (Length: 222)

Name: NF14002_low_15
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14002_low_15
NF14002_low_15
[»] chr1 (3 HSPs)
chr1 (14-206)||(44133482-44133674)
chr1 (14-206)||(44129277-44129469)
chr1 (14-206)||(44141904-44142096)
[»] chr5 (7 HSPs)
chr5 (14-206)||(1505680-1505872)
chr5 (11-203)||(1492874-1493066)
chr5 (27-207)||(1482895-1483075)
chr5 (48-207)||(1487372-1487531)
chr5 (48-207)||(1478701-1478860)
chr5 (44-206)||(1499943-1500105)
chr5 (94-206)||(1509816-1509928)
[»] chr7 (7 HSPs)
chr7 (14-206)||(46706215-46706407)
chr7 (14-203)||(5303202-5303391)
chr7 (14-203)||(5315817-5316006)
chr7 (43-203)||(5311103-5311263)
chr7 (16-203)||(5285014-5285201)
chr7 (14-203)||(5288924-5289113)
chr7 (143-206)||(32530364-32530427)
[»] chr2 (1 HSPs)
chr2 (55-206)||(24163058-24163209)
[»] chr8 (1 HSPs)
chr8 (139-197)||(35251523-35251581)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 44133674 - 44133482
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||||||||    
T  44133674 ataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaattcaagtccttctcc 44133575  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44133574 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 44133482  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 44129469 - 44129277
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44129469 ataattaagcacctcatatagcgacactgcgcaaaacaacagtttcaatagtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 44129370  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44129369 cgtggtcttcagtccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaagcacttgacatatttccatattcactaag 44129277  T

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Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 44142096 - 44141904
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  44142096 ataattaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcc 44141997  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141996 cgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 44141904  T

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Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 1505872 - 1505680
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    ||||||||||| |||||||||| | ||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||||| ||| ||||||||||    
T  1505872 ataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattcatgtccttctcc 1505773  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
     || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1505772 ggtagtcttcaatccatcttgagctgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactaag 1505680  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 1493066 - 1492874
Alignment:
Q  11 aatataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttc 110  Q
    ||||| |||||||| || ||||||| | ||| ||||| |||||||| ||||||||||| |||||||||||||| ||||  |||||||| ||| | |||||    
T  1493066 aatatgattaagcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctggtccaaagccgaatagcacaccccattcatgcccttc 1492967  T
Q  111 tcctgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
    ||| || |||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  1492966 tccggttgtcttcaaaccattttgagttgatttctttctcatttcatccaagataaacaatacacatgcacttgacatatttccatattcact 1492874  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 1483075 - 1482895
Alignment:
Q  27 tcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaat 126  Q
    ||||||||| | |||  |||||||||| |||||||||||||| || ||||||||||| || || |||||||| ||||| ||||||||||||||||| |      
T  1483075 tcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatcaagcccttctcctgtggtcttaagc 1482976  T
Q  127 ccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaagt 207  Q
    || |||||||  || ||||||| ||| ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  1482975 ccctcttgagaagatttctttcgcatctcatctaagataaacaatacacatgcacttgacatgttaccatattcactaagt 1482895  T

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Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 1487531 - 1487372
Alignment:
Q  48 aacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaatccatcttgagctgacttcttt 147  Q
    ||||||||||||||||||||| || ||||||||||| || || || ||||| | ||||||||||||||||||||  | ||| |||||||||||  |||||    
T  1487531 aacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtctcaagtccctcttgagctgatctcttt 1487432  T
Q  148 ctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaagt 207  Q
    ||||||||||| || |||||||| ||||| ||||||||||| || |||||||||||||||    
T  1487431 ctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcactaagt 1487372  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 1478860 - 1478701
Alignment:
Q  48 aacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaatccatcttgagctgacttcttt 147  Q
    |||||| ||||||||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||| || | ||| |||||||| || ||||||    
T  1478860 aacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttcacctgtggttttaagtccctcttgagccgatttcttt 1478761  T
Q  148 ctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaagt 207  Q
    ||||| ||||| ||||| ||||| ||||| || |||||||| || |||||||||||||||    
T  1478760 ctcatctcatccaagatgaacaatacacatgcgcttgacatgttaccatattcactaagt 1478701  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 1500105 - 1499943
Alignment:
Q  44 gcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaatccatcttgagctgactt 143  Q
    ||||||||||||||||||||||||| || ||||||||||  || || |||||||| ||  ||||||| ||||||||||| | || ||||||||  || ||    
T  1500105 gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgattt 1500006  T
Q  144 ctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
    | ||||||| ||||  ||||| ||||| ||| | ||||| |||||||| ||||||||||||||    
T  1500005 ccttctcatctcattcaagatgaacaatacagatgcactagacatattaccatattcactaag 1499943  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 1509928 - 1509816
Alignment:
Q  94 ccccactcaagtccttctcctgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttc 193  Q
    ||||| ||||||||||| ||  ||||||| | ||| ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |    
T  1509928 ccccattcaagtccttcaccaatggtcttaattccctcttgagctgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatattac 1509829  T
Q  194 catattcactaag 206  Q
    |||||||||||||    
T  1509828 catattcactaag 1509816  T

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Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 46706215 - 46706407
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||||||||||  ||||||||||| |||  |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  46706215 ataattaagcatttcatatagcgacactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagtccttctcc 46706314  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
    ||| |||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46706315 tgttgtcttcagaccatcttgagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactaag 46706407  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 5303391 - 5303202
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    ||||||||||| |||||||||||| ||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  5303391 ataattaagcatctcatatagcgacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctcc 5303292  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
     || |||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5303291 agttgtcttcaacccatctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcact 5303202  T

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Target: chr7; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 5316006 - 5315817
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||| |||||| |||||||||| |  || ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  5316006 ataaataagcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcc 5315907  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
     || ||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5315906 cgttgtcttcaatccgtctttagttgatttctttctcatttcatctaagataaacaaaacacacgcacttgacatatttccatattcact 5315817  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 5311263 - 5311103
Alignment:
Q  43 cgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaatccatcttgagctgact 142  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| | ||||| ||| |    
T  5311263 cgcaaaacaactgtttcaatggtaagtcctggtccaaaaccaaataatacaccccactcaagtccttctcccgttgtcttcaatccgttttgagttgatt 5311164  T
Q  143 tctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5311163 tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcact 5311103  T

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Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 5285201 - 5285014
Alignment:
Q  16 aattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctg 115  Q
    ||||||||| ||||||| || | ||| ||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| |    
T  5285201 aattaagcatctcatatggcaacactgcgcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccg 5285102  T
Q  116 tggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
    | ||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  5285101 ttgtcttcaatccgttttgagttgatttctttctcatttcatccaagataaacaaaacacatgcacttgacatatttccatattcact 5285014  T

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Target: chr7; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 5288924 - 5289113
Alignment:
Q  14 ataattaagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcc 113  Q
    |||||||| || ||||||| || | ||| || ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||    
T  5288924 ataattaaacatctcatatggccacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctcc 5289023  T
Q  114 tgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact 203  Q
     || ||||||||||| |||   | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5289024 agttgtcttcaatccgtctatggttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcact 5289113  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 32530364 - 32530427
Alignment:
Q  143 tctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
    |||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||    
T  32530364 tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaag 32530427  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 24163058 - 24163209
Alignment:
Q  55 gtttcaatggtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcctgtggtcttcaatccatcttgagctgacttctttctcattt 154  Q
    |||||||||||||| ||||| |||||||  || || |||||||| ||||| ||||||||||||||||| | |||||||||||| || || |||||||| |    
T  24163058 gtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtggtctttagtccatcttgagccgatttgtttctcatct 24163157  T
Q  155 catctaagataaacaaaacacaggcacttgacatatttccatattcactaag 206  Q
    |||||||||| || || ||||| ||||||||||| || ||||||||||||||    
T  24163158 catctaagatgaataatacacatgcacttgacatgttaccatattcactaag 24163209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 35251581 - 35251523
Alignment:
Q  139 gacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccata 197  Q
    ||||||||||||||||||||||| || ||||| ||||| ||||||||||| || |||||    
T  35251581 gacttctttctcatttcatctaaaatgaacaacacacaagcacttgacatgttcccata 35251523  T

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