View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14002_low_2 (Length: 511)
Name: NF14002_low_2
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 181 - 436
Target Start/End: Complemental strand, 3077802 - 3077552
Alignment:
| Q |
181 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctttgtgcattgctcggtagcgagaggggtttggttggagttgtttaagtg |
280 |
Q |
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| T |
3077802 |
tgctttcttgtgcgttgtgtgaagtcgatacggaaaaatgaactcacctctctgtgcattgcttggtagcgagaggggtttggttggagttgtttaagtg |
3077703 |
T |
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| Q |
281 |
ggttgattactcgtttattatgcttcaaaatgtctttaatcattgggcgtgttggaacgtggggaggttttaacaagaaggtggttaagggtcttaggct |
380 |
Q |
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| T |
3077702 |
ggtcaattactcgtttattatgcttcaaaatgtctttaatcattgggcgtgttggaacg-ctggaggtttt----agaaagtggttaagggtcttaggct |
3077608 |
T |
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| Q |
381 |
cattcggcattcaactatttgggtgatttagaaggcgaggaatgaaaagattttta |
436 |
Q |
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| T |
3077607 |
catttggcatgcaactatttgggtgatttggacggcgaagaatgaaaagattttta |
3077552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 3077934 - 3077829
Alignment:
| Q |
16 |
agatggataacagagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
112 |
Q |
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| T |
3077934 |
agatggataatagagaacaattggagtgtagaggagaagagggtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
3077835 |
T |
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| Q |
113 |
gggttt |
118 |
Q |
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| T |
3077834 |
gggttt |
3077829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 44692722 - 44692825
Alignment:
| Q |
64 |
caactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatcttagtaggaggaatg |
163 |
Q |
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| T |
44692722 |
caactttggaaaagcccggctccgtcaaaagtggtggccctttcttggaaagttttgcttgatcgtattccgacgcggtggaatcttcgtagaaggaatg |
44692821 |
T |
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| Q |
164 |
ccct |
167 |
Q |
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|||| |
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| T |
44692822 |
ccct |
44692825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 15316226 - 15316260
Alignment:
| Q |
67 |
ctttggaaaagtccggctccgtctaaggtggtggc |
101 |
Q |
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| T |
15316226 |
ctttggaaaagtccggctccgtctaaggttgtggc |
15316260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 34866509 - 34866382
Alignment:
| Q |
28 |
gagaacaattggagtgtggaggagaag---gtgtttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttg |
124 |
Q |
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| T |
34866509 |
gagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggccccctcaaaagtggtggccctttcttggaaagtcttgcttg |
34866410 |
T |
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| Q |
125 |
atcgtatcccgacgcggtttaatcttag |
152 |
Q |
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||||||| ||| |||| || |||||||| |
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| T |
34866409 |
atcgtattccgtcgcgattgaatcttag |
34866382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 14248813 - 14248764
Alignment:
| Q |
63 |
ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
112 |
Q |
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| T |
14248813 |
ccaaatttggaagagtccggctccgtctaaggcggtggctctttcttgga |
14248764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 5008743 - 5008679
Alignment:
| Q |
58 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgct |
122 |
Q |
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| T |
5008743 |
tttacgcaactttggaagaatccggctcctttgaaggtggtggcactctcttggaaggttttgct |
5008679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 47337409 - 47337317
Alignment:
| Q |
58 |
tttacccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtggagggttttgcttgatcgtatcccgacgcggtttaatctt |
150 |
Q |
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| T |
47337409 |
tttagccaagtttggaagagcccggctccttctaaggtggtggcgctctcttggagatctttgcttaatcgtataccgacccgtttgaatctt |
47337317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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