View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14002_low_3 (Length: 479)
Name: NF14002_low_3
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 7741692 - 7741341
Alignment:
| Q |
19 |
gaaataatacggctcctgcatcatttacagttgttgtatttccatttggcagcttaaacttcataggcttaattctag----taaaattaggagaagcat |
114 |
Q |
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| T |
7741692 |
gaaataatacggctcctgcatcatttacagttgttgtatttccatttggcagcttaaacttcataggcttaattctagctagtaaaattaggagaagcat |
7741593 |
T |
|
| Q |
115 |
tgagaagttagaaaacttgcgtgcgaatctaatatcgagtatacttgtctacaatgtaaactgcacttgttaacacaaattgtttgcctgtcattttctt |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7741592 |
tgagaagttagaaaacttgcgtacgaatctaatatcgagtatacttgtctacaatgtaaactgcacttgttaacacaaattgtttgcctgtcattttctt |
7741493 |
T |
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| Q |
215 |
tgctatagtaaaacaaacctgtagcaaacaagttggaagagatttgcaaataatactttatcgattgattggatattaattaaaagaagtgatattaaaa |
314 |
Q |
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| T |
7741492 |
tgctatagtaaaacaaacctgtagcaaacaagatggaagagatttgcaaataatactttatcgattgattggatattaattaaaagaagtgatattaaaa |
7741393 |
T |
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| Q |
315 |
acagtaacttgtagaagatgataaaggcatcaaggaatacaaaatggtgaac |
366 |
Q |
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| T |
7741392 |
acagtaagttgtagaagatgataaaggcaccaaggaatacaaaatggtgaac |
7741341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 7741313 - 7741232
Alignment:
| Q |
394 |
cgagagaatgaggagcagatgatgaaatataaaaggtaggggcaaagttgtgattgtattatcgatgatgtccatctcattg |
475 |
Q |
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| T |
7741313 |
cgagagaatgagaagcagatgatgaaatataaaaggtaggggcaaagttgtgattgtattatcaatgttttccatttcattg |
7741232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 34970511 - 34970432
Alignment:
| Q |
51 |
gttgtatttccatttggcagcttaaacttcataggcttaattctagtaaaattaggagaagcattgagaagttagaaaac |
130 |
Q |
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| T |
34970511 |
gttgtatttccatttggtagcttaaacttcataggtttaattttaataaaattagaacaattattgaaaagctagaaaac |
34970432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 49765243 - 49765193
Alignment:
| Q |
55 |
tatttccatttggcagcttaaacttcataggcttaattctagtaaaattag |
105 |
Q |
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| T |
49765243 |
tatttctatttggtagcttaaacttcataggcttaattatagtaaagttag |
49765193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 72 - 365
Target Start/End: Original strand, 36657218 - 36657510
Alignment:
| Q |
72 |
ttaaacttcataggcttaattctagtaaaattaggagaagcattgagaagttagaaaacttgcgtgcgaatctaatatcgagtatacttgtctacaatgt |
171 |
Q |
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| T |
36657218 |
ttaaacttcatagacttaattccagtaaaattatgaaaagcattgaaaagttagaaaacttgtatatgaatctaatatccagtatacttgtctacaatgt |
36657317 |
T |
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| Q |
172 |
aaactgcacttgttaacacaaattgtttgcctgtcattttctttgctatagtaaaacaaacctgtagcaaacaagttggaagagatttgcaaataatact |
271 |
Q |
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|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36657318 |
aaactgcacttgttaacacaaattgttt-cctatcgttttctttgctatagtaaaacaaacctgtagcaaacaagatggaagagatttgcaaataatact |
36657416 |
T |
|
| Q |
272 |
ttatcgattgattggatattaattaaaagaagtgatatt-aaaaacagtaacttgtagaagatgataaaggcatcaaggaatacaaaatggtgaa |
365 |
Q |
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|||||| |||||| |||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
36657417 |
ttatcggttgatt-gatattaattaaaagaagtggtattaaaaaacaataagttgtagaagatgataaaggcaccaaggaatacaaaacggtgaa |
36657510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 3215608 - 3215662
Alignment:
| Q |
51 |
gttgtatttccatttggcagcttaaacttcataggcttaattctagtaaaattag |
105 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |
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| T |
3215608 |
gttgtatttccatttggtagcttaaacttcataggcttaattttaataaaattag |
3215662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 454
Target Start/End: Original strand, 36657533 - 36657584
Alignment:
| Q |
403 |
gaggagcagatgatgaaatataaaaggtaggggcaaagttgtgattgtatta |
454 |
Q |
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| T |
36657533 |
gaggagcaaatgatgaaatagaaaaggtaggggcaaaattgtgattgtatta |
36657584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 36657136 - 36657197
Alignment:
| Q |
19 |
gaaataatacggctcctgcatcatttacagttgttgtatttccatttggcagcttaaacttc |
80 |
Q |
| |
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|||| |||| || ||| |||| |||||| ||||||||||||||||||| ||||||||||||| |
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| T |
36657136 |
gaaaaaatatggttccggcataatttactgttgttgtatttccatttgacagcttaaacttc |
36657197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 17999403 - 17999457
Alignment:
| Q |
51 |
gttgtatttccatttggcagcttaaacttcataggcttaattctagtaaaattag |
105 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
17999403 |
gttgtattttcatttggtagcttaaacttcataggcttaattatagtaaaattag |
17999457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 38680166 - 38680116
Alignment:
| Q |
55 |
tatttccatttggcagcttaaacttcataggcttaattctagtaaaattag |
105 |
Q |
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|||||| |||||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
38680166 |
tatttctatttggtagcttaaacttcataggcttaattatagtaaagttag |
38680116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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