View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14002_low_5 (Length: 441)

Name: NF14002_low_5
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14002_low_5
NF14002_low_5
[»] chr7 (1 HSPs)
chr7 (10-419)||(17158499-17158915)
[»] chr1 (2 HSPs)
chr1 (10-419)||(11780083-11780496)
chr1 (155-269)||(10424692-10424805)
[»] chr2 (3 HSPs)
chr2 (33-363)||(12101751-12102082)
chr2 (217-333)||(22171074-22171190)
chr2 (217-333)||(22172402-22172518)
[»] chr6 (3 HSPs)
chr6 (29-383)||(14977470-14977830)
chr6 (170-351)||(11776307-11776487)
chr6 (155-267)||(9352405-9352516)
[»] chr5 (2 HSPs)
chr5 (22-351)||(5781861-5782196)
chr5 (170-346)||(19069534-19069709)
[»] chr3 (5 HSPs)
chr3 (155-269)||(16311592-16311705)
chr3 (155-269)||(16313983-16314096)
chr3 (155-269)||(18488376-18488489)
chr3 (155-269)||(18492586-18492699)
chr3 (155-269)||(18494977-18495090)
[»] chr4 (1 HSPs)
chr4 (155-348)||(33041474-33041666)
[»] chr8 (1 HSPs)
chr8 (214-346)||(29820419-29820551)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 17158499 - 17158915
Alignment:
Q  10 gaacctgtggcaattctagagatacctcatgcacgtcattgtgctcaacaattgatgaatgtagtacatgctcatggccccccttgggactctccaccaa 109  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17158499 gaacctgtggcgattccagagatacctcatgcacgtcattgtgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaa 17158598  T
Q  110 -------gggtgcgaatgattatgctccagatcatccgagagtgttgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcagatgc 202  Q
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17158599 ctactaggggtgcgaatgattatgctccacatcatccgagagtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgc 17158698  T
Q  203 gactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17158699 gactgatcccactctctcagaatgcacttcatcgtgcgcaaactaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttg 17158798  T
Q  303 tcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatgacgtcctaggcatagggactgtcaactgagaagtaacaactgctgaagtagaag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  17158799 tcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatgacgtcttgggcatagggactgtcaactgagaagtaacaactgctgaagtagaag 17158898  T
Q  403 taacagccggccccatg 419  Q
    ||||| |||||||||||    
T  17158899 taacaaccggccccatg 17158915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 11780083 - 11780496
Alignment:
Q  10 gaacctgtggcaattctagagatacctcatgcacgtcattgtgctcaacaattgatgaatgtagtacatgctcatggccccccttgggactctccaccaa 109  Q
    ||||||||||| ||||   |||||||||||| || |||| |||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||     
T  11780083 gaacctgtggcgattccttagatacctcatgtacatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccag 11780182  T
Q  110 -------gggtgcgaatgattatgctccagatcatccgagagtgttgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcagatgc 202  Q
           ||| ||||||||||||| |||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  11780183 ctcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgc 11780282  T
Q  203 gactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttg 302  Q
    ||||| | | |||||||||||||||| |||||| |||  || | |||||||||||||||||||||||||||| ||| ||||||  |||||||||| | ||    
T  11780283 gactgcttc-actctctcagaatgcatttcatcatgc--aatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctg 11780379  T
Q  303 tcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatgacgtcctaggcatagggactgtcaactgagaagtaacaactgctgaagtagaag 402  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||  |||||||||||||||||||||||||||     
T  11780380 tcaaacacgttatgtagtggaaagctgaaagatgttgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactgctgaagtagaat 11780479  T
Q  403 taacagccggccccatg 419  Q
    ||||| ||| |||||||    
T  11780480 taacaaccgaccccatg 11780496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 269
Target Start/End: Original strand, 10424692 - 10424805
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||  ||||||||||| |||||||| | || ||| ||||||||||||||||| ||| |||||||||   ||||||||    
T  10424692 acatcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttcc-actctctcagaatgcacgtcaacgtgcgcaacaggggaaaca 10424790  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  10424791 aattctaacactggc 10424805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 33 - 363
Target Start/End: Complemental strand, 12102082 - 12101751
Alignment:
Q  33 acctcatgcacgtcattgtgctcaacaattgatgaatgtagtacatgctcatggccccccttgggactctccaccaa-------gggtgcgaatgattat 125  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||        ||| ||||||||||||    
T  12102082 acctcatgcacgtcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattat 12101983  T
Q  126 gctccagatcatccgagagtgttgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaat 225  Q
         | ||  |||    || | | ||||||||||||| |||  |||||||||||||||||||||||| ||  ||| |  || |||  ||||||||| ||    
T  12101982 -----atatgttccacatgtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccg-ctctctcaggat 12101889  T
Q  226 gcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaa 325  Q
    |||| ||||||||| |||   |||||| ||||||||||||| | || ||  |||| ||||  || |||||||| |||| |||||||||||||||||||||    
T  12101888 gcacgtcatcgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaa 12101789  T
Q  326 gctgaaaggtgttgacgacaatgacgtcctaggcatag 363  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  12101788 gctgaaagatgttgacgacaatgacgtcataggcatag 12101751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 22171074 - 22171190
Alignment:
Q  217 tctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatg 316  Q
    ||||||||||||| ||| | |||||||   ||||||||| ||| ||||||||| |||   |||||| || | ||  |||||| || |||||||| || ||    
T  22171074 tctcagaatgcacatcaacatgcgcaataggggaaacaacttctaacactggcatagtatgtggcaactctccaggagaaattttatcaaacacattgtg 22171173  T
Q  317 tagtggaaagctgaaag 333  Q
    || ||||||||||||||    
T  22171174 taatggaaagctgaaag 22171190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 22172402 - 22172518
Alignment:
Q  217 tctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatg 316  Q
    ||||||||||||| ||| | |||||||   ||||||||| ||| ||||||||| |||   |||||| || | ||  |||||| || |||||||| || ||    
T  22172402 tctcagaatgcacatcaacatgcgcaataggggaaacaacttctaacactggcatagtatgtggcaactctccaggagaaattttatcaaacacattgtg 22172501  T
Q  317 tagtggaaagctgaaag 333  Q
    || ||||||||||||||    
T  22172502 taatggaaagctgaaag 22172518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 29 - 383
Target Start/End: Complemental strand, 14977830 - 14977470
Alignment:
Q  29 agatacctcatgcacgtcattgtgctcaacaattgatgaatgtagtacatgctcatggccccccttgggactctccaccaa-------gggtgcgaatga 121  Q
    |||||| ||||||| |||||  |||| |||||| ||||||||| | ||||||||||||   |||||||||||||||||||        |||  |||||||    
T  14977830 agatacatcatgcatgtcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatga 14977731  T
Q  122 ttatgctccagatcatccgagagtgttgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctca 221  Q
    ||||| |||| |||||  || || || ||||||||||||||||||   ||| ||| || ||||||||||||| || |||||||||| ||| ||||||||     
T  14977730 ttatgttccacatcataagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctcc-actctctcg 14977632  T
Q  222 gaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtg 321  Q
    |||||||| |||||||||||||   |||| ||||  |||| |||||| |||||   ||||| ||| |||||||||||  | ||||||| ||| |||| ||    
T  14977631 gaatgcacgtcatcgtgcgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatg 14977532  T
Q  322 gaaagctgaaaggtgttgacgacaatgacgtcctaggcatagggactgtcaactgagaagta 383  Q
    | ||||| |||| |||||| ||||| |||||||| |||| ||||||  ||| ||||||||||    
T  14977531 ggaagctaaaagatgttgatgacaaagacgtcctgggcacagggaccatcatctgagaagta 14977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 170 - 351
Target Start/End: Original strand, 11776307 - 11776487
Alignment:
Q  170 gggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggc 269  Q
    ||||||||||||||||||||||||  | ||||| |||| ||| ||||||||||||||||| ||||||||| |||   |||||||||  || ||||||||     
T  11776307 gggttctccaactcctcccgcgatgactgatgcaactgctcc-actctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggt 11776405  T
Q  270 gtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatgacg 351  Q
    ||| |  |||||| ||  |||  |||||| ||||||||| | ||||||| ||||||||||||||   |||||||||| ||||    
T  11776406 gtaacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaaagacg 11776487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 9352405 - 9352516
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || |||||||||||||||||| |||| |||||| ||||| || |||| | ||||||||||||||||||  |||  ||||||||   ||||||||    
T  9352405 acatcatccaccacagggttctccaacacctctcgcgatgtcagacgcaactg-ttccactctctcagaatgcatgtcaatgtgcgcaacaggggaaaca 9352503  T
Q  255 atttcaaacactg 267  Q
    | ||| |||||||    
T  9352504 aattctaacactg 9352516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 5781861 - 5782196
Alignment:
Q  22 attctagagatacctcatgcacgtcattgtgctcaacaattgatgaatgtagtacatgctcatggccccccttgggactctccaccaa-------gggtg 114  Q
    |||||| ||||||||||||||| |||   ||||||| ||  |||||| ||  |||| ||||||||   |||||||||||||||||||        |||      
T  5781861 attctacagatacctcatgcacctcaaaatgctcaataagggatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggat 5781960  T
Q  115 cgaatgattatgctccagatcatccgagagtgttgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccac 214  Q
    ||||||||| || |||| |||||| || |||||  |||||||||| || |||    ||||||||||||||| ||||||| || ||||| |||| |||  |    
T  5781961 cgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcct-c 5782059  T
Q  215 tctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgtta 314  Q
    ||||||||||||||| |||||||||||||   |||||||||  || ||||||||||||||   ||||||||  |||  ||||||  | |  ||||| ||     
T  5782060 tctctcagaatgcacgtcatcgtgcgcaacaagggaaacaacctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattg 5782159  T
Q  315 tgtagtggaaagctgaaaggtgttgacgacaatgacg 351  Q
    |||| ||||||||||||||   |||||||||| ||||    
T  5782160 tgtaatggaaagctgaaagagtttgacgacaaagacg 5782196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 170 - 346
Target Start/End: Original strand, 19069534 - 19069709
Alignment:
Q  170 gggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggc 269  Q
    ||||||||||||||||| |||||| || ||||| || | |||  |||||||||||||||| |||||||||||||   |||||| ||  || |||||||||    
T  19069534 gggttctccaactcctctcgcgatgtctgatgcaaccgctcct-ctctctcagaatgcacgtcatcgtgcgcaacaggggaaataacctctaacactggc 19069632  T
Q  270 gtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaa 346  Q
    |||||  |||||||||  | |  |||||| ||||||||| | || |||| ||||||||||||||   ||||||||||    
T  19069633 gtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa 19069709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 16311705 - 16311592
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||| ||||||||||| |||||||| | || | ||||| ||||| ||||||| |||  ||||||||   ||||||||    
T  16311705 acatcatccaccacggggttctccaacacctcccgcgatgtcagatgcaattg-ttccactttctcaaaatgcacatcaatgtgcgcaacaggggaaaca 16311607  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  16311606 aattctaacactggc 16311592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 16314096 - 16313983
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||| ||||||| ||| |||||||| | || | ||||| ||||| ||||||| ||| |||||||||   ||||||||    
T  16314096 acatcatccaccacggggttctccaacacctcccgtgatgtcagatgcaattg-ttccactttctcaaaatgcacatcaacgtgcgcaataggggaaaca 16313998  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  16313997 aattctaacactggc 16313983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 18488489 - 18488376
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||| ||||||||||| |||||||| | || | ||||| ||||| ||||||| |||  ||||||||   ||||||||    
T  18488489 acatcatccaccacggggttctccaacacctcccgcgatgtcagatgcaattg-ttccactttctcaaaatgcacatcaatgtgcgcaacaggggaaaca 18488391  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  18488390 aattctaacactggc 18488376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 18492699 - 18492586
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||| ||||||||||| |||||||| | || | ||||| ||||| ||||||| |||  ||||||||   ||||||||    
T  18492699 acatcatccaccacggggttctccaacacctcccgcgatgtcagatgcaattg-ttccactttctcaaaatgcacatcaatgtgcgcaacaggggaaaca 18492601  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  18492600 aattctaacactggc 18492586  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 18495090 - 18494977
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || ||||| |||||||||||| ||||||| ||| |||||||| | || | ||||| ||||| ||||||| ||| |||||||||   ||||||||    
T  18495090 acatcatccaccacggggttctccaacacctcccgtgatgtcagatgcaattg-ttccactttctcaaaatgcacatcaacgtgcgcaataggggaaaca 18494992  T
Q  255 atttcaaacactggc 269  Q
    | ||| |||||||||    
T  18494991 aattctaacactggc 18494977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 348
Target Start/End: Original strand, 33041474 - 33041666
Alignment:
Q  155 acatcgtcaaccacagggttctccaactcctcccgcgatatcagatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaaactgggaaaca 254  Q
    ||||| || |||||||||||||||||| ||||||||||| ||| |||| ||| || || |||||||||||| ||| ||| ||||| |||    |||| ||    
T  33041474 acatcatccaccacagggttctccaacacctcccgcgatgtcatatgcaact-attcccctctctcagaatacacgtcaacgtgcacaacagaggaagca 33041572  T
Q  255 atttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacgacaatg 348  Q
    | ||  ||||||||| |||   |||||| ||  |||  ||||||  | |||||||| || |||| ||||||||||||||   ||||||||||||    
T  33041573 aattataacactggcatagtatgtggcaactcctcaggagaaattctatcaaacacattgtgtaatggaaagctgaaagagtttgacgacaatg 33041666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 29820551 - 29820419
Alignment:
Q  214 ctctctcagaatgcacttcatcgtgcgcaaactgggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgtt 313  Q
    |||||||||||||||  ||| |||||||||   ||||||||| ||| ||||||||| |||   |||||| ||  |||  ||||||  | |||||||| ||    
T  29820551 ctctctcagaatgcatgtcaacgtgcgcaataagggaaacaaattctaacactggcatagtatgtggcaactcctcaggagaaattctatcaaacacatt 29820452  T
Q  314 atgtagtggaaagctgaaaggtgttgacgacaa 346  Q
     |||| ||||||||||||||   ||||||||||    
T  29820451 gtgtaatggaaagctgaaagagtttgacgacaa 29820419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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