View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14002_low_6 (Length: 432)
Name: NF14002_low_6
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_low_6 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 31266272 - 31266692
Alignment:
| Q |
1 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31266272 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
31266371 |
T |
|
| Q |
101 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccaccttttgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31266372 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccaccttttgacc |
31266471 |
T |
|
| Q |
201 |
aatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31266472 |
aatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcaca |
31266571 |
T |
|
| Q |
301 |
atagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31266572 |
atagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaa |
31266671 |
T |
|
| Q |
401 |
agtttaatcaatggactcatt |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31266672 |
agtttaatcaatggactcatt |
31266692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 54474221 - 54474641
Alignment:
| Q |
1 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
100 |
Q |
| |
|
||||||||||||||| || | | ||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||| || |
|
|
| T |
54474221 |
tcaattgaattgcattaaatctttagcaaatctgagcaaactatccaaagcatcaggactgaatttccttgcaaacaaatggcaaacattggttgtcctt |
54474320 |
T |
|
| Q |
101 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccaccttttgacc |
200 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||| |||||| || || | | ||| || ||||||||| ||||||| ||||||| |
|
|
| T |
54474321 |
ccattgtactcacaactgctaccaaaccttaacctctccaaaaaatctttagtcacatctttgccattaaattttgatggatgtcgtccaccatttgacc |
54474420 |
T |
|
| Q |
201 |
aatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcaca |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| |||||||||| || |||||||| ||||||||||||||||| |||| ||||| || |
|
|
| T |
54474421 |
aatcaacccaagtcaaagttctgttagaattcctctcccaaaatttgatactaatcaatgttggcaaatagtgttcatcactataacatgaagggttgca |
54474520 |
T |
|
| Q |
301 |
atagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaa |
400 |
Q |
| |
|
|| ||||| ||| ||||||||||| || |||||| |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54474521 |
gtattttttaaacttagaaaaatatgtctcgtcggatactatatgaactgcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaa |
54474620 |
T |
|
| Q |
401 |
agtttaatcaatggactcatt |
421 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
54474621 |
agttcaatcaatggcctcatt |
54474641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1141348 - 1140928
Alignment:
| Q |
1 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | |||| || ||||||||| |||| | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1141348 |
tcaattgaattgcattaactttggtgcaaatgtgagcagtccatccaaagcttgagtaccgaatttccttgcaaacaaatgacaaacattggttgtcttt |
1141249 |
T |
|
| Q |
101 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccaccttttgacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||| | |||||| | ||||||| |||||| |
|
|
| T |
1141248 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccacctcttgacc |
1141149 |
T |
|
| Q |
201 |
aatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcaca |
300 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||| ||| |||| ||| |
|
|
| T |
1141148 |
aatcaacccaagtcaaagtcctgttagaattcctcttccaaaatttgatacttaccaatgttggcaaataatgttcatcactataacatcctgggtgaca |
1141049 |
T |
|
| Q |
301 |
atagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaa |
400 |
Q |
| |
|
||| |||||||| | |||||||||| ||||||||| || ||| || ||||| ||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
1141048 |
atattttttgaagacagaaaaatatggcttgtcggagacgatacaaaccgcaagataacgatcaatttggaaccattgagccccttttctccattgtgaa |
1140949 |
T |
|
| Q |
401 |
agtttaatcaatggactcatt |
421 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
1140948 |
agttgaatcaatggtctcatt |
1140928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 1137887 - 1137467
Alignment:
| Q |
1 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | ||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
1137887 |
tcaattgaattgcattaactttggggcaaatgtgagcaatccatccaaagcttgagttccgaatttccttgcaaacaaatgacaaacattggttgttttt |
1137788 |
T |
|
| Q |
101 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgtctaaaaaacttagatggatgtggtccaccttttgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || || ||| |||||| | |||||| | |||||||||||||| |
|
|
| T |
1137787 |
ccattgtactcacaagtgcttccaaatcttaatctctccaaaaaatcaatagtcacatctttgctactaaactttgctggatgggctccaccttttgacc |
1137688 |
T |
|
| Q |
201 |
aatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcaca |
300 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||| |||||||| |||| |||||||| || |||||||||||| ||| |||| ||| |
|
|
| T |
1137687 |
aatcaacccaagttaaagtcctgttagaattcctcttccaaaatttgatacttaccaatgttggcaaataatgttcatcactaatacatcttgggtgaca |
1137588 |
T |
|
| Q |
301 |
atagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaa |
400 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| || ||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
1137587 |
atattttttgaacatagaaaaatatggcttgtcggagacaatacgaactgcaagataacgatcaatttggaaccattgagccccttttctccattgtgaa |
1137488 |
T |
|
| Q |
401 |
agtttaatcaatggactcatt |
421 |
Q |
| |
|
|||| ||||||||||| |||| |
|
|
| T |
1137487 |
agttgaatcaatggacacatt |
1137467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 22841354 - 22841431
Alignment:
| Q |
178 |
tggatgtggtccaccttttgaccaatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaac |
255 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||| ||||||| | ||| |||||||||||||| || ||||| |
|
|
| T |
22841354 |
tggatggggtccaccctttgaccagtcaacccaagtcaaacttctatttgtattactcttccaaaacttaatgctaac |
22841431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 48323130 - 48323526
Alignment:
| Q |
1 |
tcaattgaattgcatcaactttggagcaaatctaagcaatctatccaaagcatgaggagtgaatttccttgcaaacaaatgacaaacattgattgtcttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| || |||| || |
|
|
| T |
48323130 |
tcaattgaattgcattaactttggagcatatctaaccaatatatccaaagcatgaggagtgaacttccttgcaaacaaatgacaaa---tggatgtcctt |
48323226 |
T |
|
| Q |
101 |
ccattgtactcacaagtgcttccaaaccttaacctctccaaaaaatcaatagtcaaatgttgt-ctaaaaaacttagatggatgtggtccaccttttgac |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||| || || | || ||||||| || ||||| ||||||||||||||| |
|
|
| T |
48323227 |
ccattgtgctcacaagtgcttccaaacctcaacctctccaaaaattcagtagtcacatcttttcctgtaaaactt-gaaggatggggtccaccttttgac |
48323325 |
T |
|
| Q |
200 |
caatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttcatcactatagcatggagggtcac |
299 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||| ||| | | | |||| | ||||||| ||| |||||||||||||||||||||| || | |
|
|
| T |
48323326 |
caatcaacccaagttaaagtcctattagaatttctcttcccaaattcgttgctaataaaagttggcaggtaatgttcatcactatagcatggagtgttgc |
48323425 |
T |
|
| Q |
300 |
aatagtttttgaacatagaaaaatataacttgtcggaaactatatgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtga |
399 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| |||||||| |||||| ||||| |||| ||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
48323426 |
aatactttttgaacatagaaaaatatgtcttgtcagaaactatgtgaagtccaaggtaacggtcaatttgaaaccattgagacccttttttccattgtga |
48323525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 280
Target Start/End: Original strand, 49735445 - 49735547
Alignment:
| Q |
178 |
tggatgtggtccaccttttgaccaatcaacccaagtcaaagttctattagaattcctcttccaaaacttgatactaaccattgttggcatgtagtgttca |
277 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||||||| | ||||| ||||| | | || |||||| || ||||||| ||||||| ||| |||||| |
|
|
| T |
49735445 |
tggatgtggaccaccccttgaccagtcaacccaagtcaaactcctatttgaatttccttccccaaactttatgctaaccaaagttggcaagtaatgttca |
49735544 |
T |
|
| Q |
278 |
tca |
280 |
Q |
| |
|
||| |
|
|
| T |
49735545 |
tca |
49735547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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