View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14002_low_8 (Length: 306)
Name: NF14002_low_8
Description: NF14002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14002_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 42 - 285
Target Start/End: Original strand, 30464197 - 30464441
Alignment:
| Q |
42 |
aaaaggaaggaaatcatcgagtaaatctaagaatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaa |
141 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464197 |
aaaaggaaggaaatcatcgagtaaatctaagtatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaa |
30464296 |
T |
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| Q |
142 |
gtggttt-atctaaatttggtaattaaattcagtgtaactggagttcatcatgtgtagtactaactttttagctaaggttctgtcactgtctttttgtta |
240 |
Q |
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||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30464297 |
gtggttttatctaaatttggtaattaaattcagtgtagctagagttcatcatgtgtagtactaactttttagctaaggttctctcactgtctttttgtta |
30464396 |
T |
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| Q |
241 |
ccactctttacaaagagtctcagtttgtctaaagagctcacgggt |
285 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30464397 |
ccactcttgacaaagagtctcagtttgtctaaagagctcacgggt |
30464441 |
T |
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