View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_high_20 (Length: 246)
Name: NF14003_high_20
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 22514816 - 22515037
Alignment:
| Q |
11 |
aagaatatacaaaagaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactcta--atatatagggtaggtaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22514816 |
aagaaaatacaaaagaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactctaatatatatagggtaggtaa |
22514915 |
T |
|
| Q |
109 |
acatacttttttgactcgataagnnnnnnnnnnnnntaactgagtaacataacccccttttattccctctggctgttacagcaggtaaacttaaacaatg |
208 |
Q |
| |
|
|||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22514916 |
acatacacttttgactcaataagaaaaataaaaaaataaccgagtaacataacccccttttattccctctggctgttacagcaggtaaacttaaacaatg |
22515015 |
T |
|
| Q |
209 |
actactgcttatgtaacatttc |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22515016 |
actactgcttatgtaacatttc |
22515037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 37310856 - 37310952
Alignment:
| Q |
25 |
gaaaaagccaaacaatgttattcataaaatcagacgtattctgtataatattaaatgtaatactctaatatatagggtaggtaaacatacttttttg |
121 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| |
|
|
| T |
37310856 |
gaaaaagccaaacaatgttatccataagatcagaagtattatgtataatattaaatgtaatactctaatctatagggtaagtaaccatactcttttg |
37310952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University