View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14003_high_27 (Length: 216)
Name: NF14003_high_27
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_high_27 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 924859 - 924647
Alignment:
| Q |
1 |
ttaaacattatttttattaggacacacaaagtcttatttaaagttacattgaagaccattttacatccatacttgagaggagatttgaactcagtctcta |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
924859 |
ttaaacattatttttatttggacacacaa-gtcttatttaaagttacattgaagaccattttacaaccatacttgagaggagatttgaactcagtctcta |
924761 |
T |
|
| Q |
101 |
tcgtaggacattcaaagtaacttaatttataatacagctattaattatttttgaagtagtttctcnnnnnnnnnnnngtggtaattattgacagagatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
924760 |
tcgtaggacattcaaagtaacttaatttataatacagctattaattatttttgaagtagcttct--atatatatatagtggtaattattgacggagatga |
924663 |
T |
|
| Q |
201 |
aattggtggttttatt |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
924662 |
aattggtggttttatt |
924647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 916806 - 916644
Alignment:
| Q |
1 |
ttaaacattatttttattaggacacacaaagtctta-tttaaagttacattgaagaccattttacatccatacttgagaggagatttgaactcagtctct |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
916806 |
ttaaacattatttttattaggacatacaaagttttaatttaaagttacattgaagaccattttaaaaccatacttgag--gagatttgaactcagtctct |
916709 |
T |
|
| Q |
100 |
atcgtaggacattcaaagtaacttaatttataatacagctattaattatttttgaagtagtttct |
164 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| |
|
|
| T |
916708 |
attgtaggacattcaaagtaacttaatttataatatatgtattaaatatttttgaagtagcttct |
916644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 910292 - 910171
Alignment:
| Q |
34 |
ttatttaaagttacattgaagaccattttacatccatacttgagaggagatttgaactcagtctctatcgtaggacattcaaagtaacttaatttataat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
910292 |
ttatttaaagttacattgaagaccatttttcaaccatacttgag--gagatttgaactccgtctctatcgtaggacattcaaagtaactcaatttataat |
910195 |
T |
|
| Q |
134 |
acagctattaattatttttgaagt |
157 |
Q |
| |
|
||| |||||| |||||||||||| |
|
|
| T |
910194 |
acaagtattaagtatttttgaagt |
910171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University