View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14003_high_4 (Length: 493)

Name: NF14003_high_4
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14003_high_4
NF14003_high_4
[»] chr8 (1 HSPs)
chr8 (373-478)||(26025999-26026104)
[»] chr3 (1 HSPs)
chr3 (78-152)||(13363743-13363816)
[»] chr7 (2 HSPs)
chr7 (330-374)||(16792576-16792620)
chr7 (375-419)||(21571070-21571114)
[»] chr4 (1 HSPs)
chr4 (327-374)||(30577797-30577844)
[»] chr6 (1 HSPs)
chr6 (375-419)||(29410997-29411041)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 478
Target Start/End: Original strand, 26025999 - 26026104
Alignment:
Q  373 atttagaaaataatttgtgattaagttcaaatcaatttctgaccattttaaatgatgccacatcactctctggtgcgttggtgtgtatgtgcatgttgtg 472  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||    
T  26025999 atttaaaaaatgatttgtgattaagttcaaatgaatttctgaccattttaaatgatgccacatcactctatggtgcgttcgtgtgtatttgcatgttgtg 26026098  T
Q  473 ccacat 478  Q
    ||||||    
T  26026099 ccacat 26026104  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 13363743 - 13363816
Alignment:
Q  78 gaagctgatgtttctattctgttctgaaaccgaccttgtgctctaattgttcaattttctctctgtcacgtgaag 152  Q
    |||||||||||| ||| |||||| ||||||||||||  ||||||||||| |||||||||| ||  ||||||||||    
T  13363743 gaagctgatgtt-ctactctgttttgaaaccgacctgatgctctaattggtcaattttctgtcaatcacgtgaag 13363816  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 16792576 - 16792620
Alignment:
Q  330 ttagggcgaacctgcaggtttgtactgcattagtaatattatgat 374  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  16792576 ttagggcgaacctgcagcttagtattgcattagtaatattatgat 16792620  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 21571070 - 21571114
Alignment:
Q  375 ttagaaaataatttgtgattaagttcaaatcaatttctgaccatt 419  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||||    
T  21571070 ttagaaaatgatttgtgattaagttcaaatgaatttctgagcatt 21571114  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 30577797 - 30577844
Alignment:
Q  327 aaattagggcgaacctgcaggtttgtactgcattagtaatattatgat 374  Q
    |||||||||| ||||||||| || ||| ||||||||||||||||||||    
T  30577797 aaattagggcaaacctgcagcttagtattgcattagtaatattatgat 30577844  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 29410997 - 29411041
Alignment:
Q  375 ttagaaaataatttgtgattaagttcaaatcaatttctgaccatt 419  Q
    |||| |||| |||||||||||||||||||| ||||||||| ||||    
T  29410997 ttagcaaatgatttgtgattaagttcaaatgaatttctgagcatt 29411041  T

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