View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14003_high_7 (Length: 421)
Name: NF14003_high_7
Description: NF14003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14003_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 41012230 - 41012617
Alignment:
| Q |
22 |
aggcaatgcacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaaacttacctggagaaaactaata |
121 |
Q |
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| T |
41012230 |
aggcaatgcacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaa-cttacctggagaaaactaata |
41012328 |
T |
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| Q |
122 |
ttgtgctaaaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattcaggatgtgaaaaagcatggcgtggtca--t |
219 |
Q |
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| T |
41012329 |
ttgtgctaaaagcaacatggtattaatttcaatcttttggaaatattgaaagcaacttgaatttagattcaggatgtgaaaaagcatggcgtggtcacat |
41012428 |
T |
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| Q |
220 |
tacagtcaagagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatcttaagttattgaattgacatgagttgttaga |
319 |
Q |
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| T |
41012429 |
tacagtcaagagattggagtcattagacgaaaatcagacagttcacattctgagtttgtgttttaaatcttaagttaatgaattgacatgagttgttaga |
41012528 |
T |
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| Q |
320 |
ttttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggaggggtgatttattcttctca |
408 |
Q |
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| T |
41012529 |
ttttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggaggggtgatttattcttctca |
41012617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 12111201 - 12111302
Alignment:
| Q |
22 |
aggcaatgcacttacagcttgttgaatttcctgaatatcataaagcacaaaacggtgcataagcattccaacgaaaaaacttacctggagaaaactaata |
121 |
Q |
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| T |
12111201 |
aggcaatgcaccaacagcttgttgaatttcctgaatatcataa-gcacaaaatggtgcatcagcattccaacgaaaaaacataactggagaaaactaata |
12111299 |
T |
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| Q |
122 |
ttg |
124 |
Q |
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||| |
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| T |
12111300 |
ttg |
12111302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 12111393 - 12111561
Alignment:
| Q |
220 |
tacagtcaagagattggagtcattagacgaaaatcagacaattcacattctgagtttgtgttttaaatcttaagttattgaattgacatgagttgttaga |
319 |
Q |
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|||||||| ||| ||||| ||||| | |||||||||||| |||||||||||| || ||| ||||||||| || ||| |||||||||| |||| |||||| |
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| T |
12111393 |
tacagtcatcagactggagccattacatgaaaatcagacagttcacattctgactt-gtgatttaaatct-aatttactgaattgacacgagtcgttaga |
12111490 |
T |
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| Q |
320 |
ttttcatcaaatgacaccgatcgcatgactgtagttactaatatgctcactcagaacaaggttttgggagg |
390 |
Q |
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|||||||||| |||||| ||| |||||||| ||||||| || | |||||| | | ||||||||||||||| |
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| T |
12111491 |
ttttcatcaatcgacaccaatcacatgactgcagttactgatgtactcactaaaaccaaggttttgggagg |
12111561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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